Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42712
Using a mechanistic framework to model the density of an aquatic parasite Ceratonova shasta Using a mechanistic framework to model the density of an aquatic parasite Ceratonova shasta
Ceratonova shasta is a myxozoan parasite endemic to the Pacific Northwest of North America that is linked to low survival rates of juvenile salmonids in some watersheds such as the Klamath River basin. The density of C. shasta actinospores in the water column is typically highest in the spring (March–June), and directly influences infection rates for outmigrating juvenile salmonids...
Authors
H. E. Robinson, Julie D Alexander, Jerri L Bartholomew, Sascha L Hallett, Nicholas J. Hetrick, Russell Perry, Nicholas A. Som
Collaborative hubs: Making the most of predictive epidemic modeling Collaborative hubs: Making the most of predictive epidemic modeling
The COVID-19 pandemic has made it clear that epidemic models play an important role in how governments and the public understand and respond to infectious disease crises. In the early days of the COVID-19 pandemic, models were used first to estimate the true number of infections, then to provide estimates of key parameters, to generate short-term forecasts of outbreak trends, and to...
Authors
Nicholas G. Reich, Justin Lessler, Sebastian Funk, Cecile Viboud, Alessandro Vespignani, Ryan J Tibshirani, Katriona Shea, Melanie Schienle, Michael C. Runge, Roni Rosenfeld, Evan L Ray, Rene Niehus, Helen C Johnson, Michael A Johansson, Harry Hochheiser, Lauren Gardner, Johannes Bracher, Rebecca K. Borchering, Matthew Biggerstaff
Water availability drives instream conditions and life-history of an imperiled desert fish: A case study to inform water management Water availability drives instream conditions and life-history of an imperiled desert fish: A case study to inform water management
In arid ecosystems, available water is a critical, yet limited resource for human consumption, agricultural use, and ecosystem processes—highlighting the importance of developing management strategies to meet the needs of multiple users. Here, we evaluated how water availability influences stream thermal regimes and life-history expressions of Lahontan cutthroat trout (Oncorhynchus...
Authors
Robert K. Al-Chokhachy, Roger Peka, Erik Horgen, Daniel J. Kaus, Tim Loux, Lisa Heki
Forest bird populations at the Big Island National Wildlife Refuge Complex, Hawai‘i Forest bird populations at the Big Island National Wildlife Refuge Complex, Hawai‘i
Endemic Hawaiian forest birds have experienced dramatic population declines. The Big Island National Wildlife Refuge Complex (BINWRC) was created for conservation of endangered Hawaiian forest birds and their habitats. Surveys have been conducted at two units of BINWRC to monitor forest bird populations and their response to management actions. We analyzed survey data from 1987 to 2019...
Authors
Steven J. Kendall, Rachel A. Rounds, Richard J. Camp, Ayesha Genz
Fungal endophyte effects on invasive Phragmites australis performance in field and growth chamber environments Fungal endophyte effects on invasive Phragmites australis performance in field and growth chamber environments
Manipulating plant microbiomes may provide control of invasive species. Invasive Phragmites australis has spread rapidly in North American wetlands, causing significant declines in native biodiversity. To test microbiome effects on host growth, we inoculated four common fungal endophytes into replicated Phragmites genotypes and monitored their growth in field and growth chamber...
Authors
Quynh N Quach, Thomas T Thrasher, Kurt P. Kowalski, Keith Clay
Ecological consequences of neonicotinoid mixtures in streams Ecological consequences of neonicotinoid mixtures in streams
Neonicotinoid mixtures are common in streams worldwide, but corresponding ecological responses are poorly understood. We combined experimental and observational studies to narrow this knowledge gap. The mesocosm experiment determined that concentrations of the neonicotinoids imidacloprid and clothianidin (range of exposures, 0 to 11.9 μg/liter) above the hazard concentration for 5% of...
Authors
Travis S. Schmidt, Janet L. Miller, Barbara Mahler, Peter C. Van Metre, Lisa H. Nowell, Mark W. Sandstrom, Daren M. Carlisle, Patrick W. Moran, Paul M. Bradley
Soil depth and precipitation moderate soil textural effects on seedling survival of a foundation shrub species Soil depth and precipitation moderate soil textural effects on seedling survival of a foundation shrub species
In drylands, there is a need for controlled experiments over multiple planting years to examine how woody seedlings respond to soil texture and the potentially interactive effects of soil depth and precipitation. Understanding how multiple environmental factors interactively influence plant establishment is critical to restoration ecology and in this case to broad-scale restoration...
Authors
Kari E. Veblen, Kyle C. Nehring, Michael C. Duniway, Anna C. Knight, Thomas A. Monaco, Eugene W. Schupp, Janis L Boettinger, Juan J Villalba, Steven Fick, Colby C. Brungard, Eric Thacker
Summer/fall diet and macronutrient assimilation in an Arctic predator Summer/fall diet and macronutrient assimilation in an Arctic predator
Free-ranging predator diet estimation is commonly achieved by applying molecular-based tracers because direct observation is not logistically feasible or robust. However, tracers typically do not represent all dietary macronutrients, which likely obscures resource use as prey proximate composition varies and tissue consumption can be specific. For example, polar bears (Ursus maritimus)
Authors
Craig A. Stricker, Karyn D. Rode, Brian D. Taras, Jeffrey F. Bromaghin, Lara Horstmann, Lori T. Quakenbush
Seed menus: An integrated decision-support framework for native plant restoration in the Mojave Desert Seed menus: An integrated decision-support framework for native plant restoration in the Mojave Desert
The combination of ecosystem stressors, rapid climate change, and increasing landscape-scale development has necessitated active restoration across large tracts of disturbed habitats in the arid southwestern United States. In this context, programmatic directives such as the National Seed Strategy for Rehabilitation and Restoration have increasingly emphasized improved restoration...
Authors
Daniel F. Shryock, Lesley A. DeFalco, Todd Esque
Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well-being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with...
Authors
Sean M. Hoban, Frederick I. Archer, Laura D. Bertola, Jason G. Bragg, Martin F. Breed, Michael W. Bruford, Melinda A. Coleman, Robert Ekblom, W. Chris Funk, Catherine E. Grueber, Brian K. Hand, Rodolfo Jaffé, Evelyn Jensen, Jeremy S. Johnson, Francine Kershaw, Libby Liggins, Anna J. MacDonald, Joachim Mergeay, Joshua M. Miller, Frank Muller-Karger, David O'Brien, Ivan Paz-Vinas, Kevin M. Potter, Orly Razgour, Cristiano Vernesi, Margaret Hunter
Extent of sedge-grass meadow in a Lake Michigan drowned river mouth wetland dictated by topography and lake level Extent of sedge-grass meadow in a Lake Michigan drowned river mouth wetland dictated by topography and lake level
Water-level fluctuations are critical in maintaining diversity of plant communities in Great Lakes wetlands. Sedge-grass meadows are especially sensitive to such fluctuations. We conducted vegetation sampling in a sedge-grass dominated Lake Michigan drowned river mouth wetland in 1995, 2002, and 2010 following high lake levels in 1986 and 1997. We also conducted photointerpretation...
Authors
Douglas A. Wilcox, John A Bateman, Kurt P. Kowalski, James E Meeker, Nicole Dunn
Increased mercury and reduced insect diversity in linked stream-riparian food webs downstream of a historical mercury mine Increased mercury and reduced insect diversity in linked stream-riparian food webs downstream of a historical mercury mine
Historical mining left a legacy of abandoned mines and waste rock in remote headwaters of major river systems in the western United States. Understanding the influence of these legacy mines on culturally and ecological important downstream ecosystems is not always straight-forward because of elevated natural levels of mineralization in mining-impacted watersheds. To test the ecological...
Authors
Johanna M. Kraus, JoAnn M. Holloway, Michael Pribil, Ben N. Mcgee, Craig A. Stricker, Danny Rutherford, Andrew S. Todd