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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175495

The scale-dependent role of submerged macrophytes as drift-feeding lotic fish habitat The scale-dependent role of submerged macrophytes as drift-feeding lotic fish habitat

Although submerged macrophyte (hereafter, “macrophyte”) communities are globally prevalent in low-gradient rivers, the net reach-scale effect of macrophytes on drift-feeding fish microhabitat preference is poorly understood. We used snorkeling and bioenergetics to study fish habitat selection for rainbow trout (Oncorhynchus mykiss) in the Henrys Fork, ID, USA, investigating microhabitat...
Authors
John S. McLaren, Robert W. Van Kirk, Phaedra E. Budy, Soren Brothers

Riparian vegetation response amid variable climate conditions across the Upper Gila River watershed: Informing Tribal restoration priorities Riparian vegetation response amid variable climate conditions across the Upper Gila River watershed: Informing Tribal restoration priorities

Riparian systems across the Southwest United States are extremely valuable for the human and ecological communities that engage with them. However, they have experienced substantial changes and stresses over the past century, including non-native vegetation expansion, vegetation die-offs, and increased fire activity. Vegetation management approaches, such as ecological restoration, may...
Authors
Roy E. Petrakis, Laura M. Norman, Barry R. Middleton

Presence of hummock and hollow microtopography reflects shifting balances of shallow subsidence and root zone expansion along forested wetland river gradients Presence of hummock and hollow microtopography reflects shifting balances of shallow subsidence and root zone expansion along forested wetland river gradients

Tidal freshwater forested wetlands (TFFWs) are in an active phase of transition to tidal marsh with sea level rise and salinity incursion along the Atlantic and Gulf Coasts of the United States (U.S.). A prominent feature of TFFWs is hummock/hollow microtopography where hollows represent the flat, base-elevation of the floodplain where inundation occurs relatively frequently, while...
Authors
Ken Krauss, Gregory E. Noe, Jamie A. Duberstein, Nicole Cormier, Andrew From, Thomas Rossiter Doody, William H. Conner, Donald R. Cahoon, Darren Johnson

A novel suspended-sediment sampling method: Depth-Integrated Grab (DIG) A novel suspended-sediment sampling method: Depth-Integrated Grab (DIG)

Measuring suspended sediment in fluvial systems is critical to understanding and managing water resources. Sampling suspended sediment has been the primary means of understanding fluvial suspended sediment. Specialized samplers, sampling methods, and laboratory methods developed by select U.S. Federal Agencies are more representative of river and stream conditions than commonly used grab...
Authors
Joel T. Groten, Sara B. Levin, Erin N. Coenen, J. William Lund, Gregory D. Johnson

Validation of a species-specific probe-based qPCR assay for the threatened meltwater stonefly, Lednia tumana, in environmental samples Validation of a species-specific probe-based qPCR assay for the threatened meltwater stonefly, Lednia tumana, in environmental samples

A probe-based quantitative real-time PCR assay was developed to detect meltwater stonefly (Lednia tumana) environmental (e)DNA in water samples. The limits of detection and quantification, respectively, were 12.1 and 58.4 gene copies for calibration standards and these values were similarly low in a relevant environmental sample matrix (8.6 and 174.2, respectively). The assay’s utility...
Authors
Patrick Ross Hutchins, Jonathan Giersch, Adam Sepulveda, Clint C. Muhlfeld

Triple oxygen isotope compositions of globally distributed soil carbonates record widespread evaporation of soil waters Triple oxygen isotope compositions of globally distributed soil carbonates record widespread evaporation of soil waters

The stable isotopic composition of pedogenic carbonates is central to many studies of past climate and topography, providing a basis for our understanding of Earth's terrestrial history. A core assumption of many applications of oxygen isotope values (δ18O) of pedogenic carbonate is that they reflect the δ18O value of precipitation (rain/snow). This assumption is violated if soil...
Authors
Julia Kelson, Tyler E. Huth, Benjamin H. Passey, Naomi E. Levin, Sierra V. Petersen, Paolo Ballato, Emily J. Beverly, Daniel O. Breecker, Gregory D. Hoke, Adam M. Hudson, Ji Haoyuan, Alexis Licht, Jay Quade

Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples Development of a quantitative PCR assay for detecting northwest salamander (ambystoma gracile) in environmental DNA samples

We developed a primer and probe based quantitative PCR assay for use with environmental DNA to detect Northwest salamander (Ambystoma gracile), a species endemic to the temperate Pacific coastal region of North America. The assay targets a region in the mitochondrial DNA (mtDNA) D-loop gene. Tests of the assay were performed in silico (using the NCBI BLAST tool), in vitro (using DNA...
Authors
Marshal S. Hoy, Carl O. Ostberg

Human and infrastructure exposure to large wildfires in the United States Human and infrastructure exposure to large wildfires in the United States

An increasing number of wildfire disasters have occurred in recent years in the United States. Here we demonstrate that cumulative primary human exposure—the population residing within the perimeters of large wildfires—was 594,850 people from 2000 to 2019 across the contiguous United States (CONUS), 82% of which occurred in the western United States. Primary population exposure increased...
Authors
Arash Modaresi Rad, John T. Abatzoglou, Jason R. Kreitler, Mohammad Reza Alizadeh, Amir AghaKouchak, Nicholas Hudyma, NIcholas Nauslar, Mojtaba Sadegh

Earthquake scenarios for Quito, Ecuador; Cali, Colombia; and Santiago De Los Caballeros, Dominican Republic Earthquake scenarios for Quito, Ecuador; Cali, Colombia; and Santiago De Los Caballeros, Dominican Republic

Earthquake risk associated with Quito, Ecuador; Cali, Colombia; and Santiago de los Caballeros, Dominican Republic is examined by generating a set of hypothetical earthquake scenarios considering seismic sources, recent seismicity, and major historical earthquakes recorded in the vicinity. In this study, particular focus is given to the development of earthquake scenarios for use in...
Authors
Robert Edward Chase, Kishor S. Jaiswal, Alejandro Calderon, Hugo Yepes, Loren Goddard, Catalina Yepes-Estrada

Biotic and abiotic factors shaping bat activity in Maryland soybean fields Biotic and abiotic factors shaping bat activity in Maryland soybean fields

Bats are important pest control agents in agriculture. Yet, the underlying fine-scale biotic and abiotic mechanisms that drive their foraging behaviors and responses to insect outbreaks are unclear. Herbivore-induced plant volatiles (HIPVs) can attract both invertebrate and vertebrate natural enemies that use the chemical plant cues to locate insect prey. The ability of HIPVs to attract...
Authors
Lauren D. Maynard, W. Mark Ford, John D. Parker, Susan R. Whitehead

Validation and standardization of SPE and HPLC-UV methods for simultaneous determination of legacy and insensitive munitions Validation and standardization of SPE and HPLC-UV methods for simultaneous determination of legacy and insensitive munitions

There have been few attempts to consolidate legacy and insensitive munitions analyses. Furthermore, there are no standard methods for insensitive munitions (IM) in tissues, resulting in overlapping methods and supplementary analyses. The goal of the present study was to validate extraction and instrumental methods previously developed and address analytical methodology gaps (missing...
Authors
Austin Scircle, Ashley Kimble, Jared C. Smith, Bobbi Stromer, Samuel Beal, Jay Clausen, Thomas Georgian, Adam C. Mumford, Geoffrey Giarmo, Martin Peterson, Hart Hedgpeth, Rebecca Crouch, Anthony J. Bednar
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