Publications
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Community for data integration 2018 funded project report
The U.S. Geological Survey Community for Data Integration annually funds small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 10 projects funded in fiscal year 2018, outlining their goals, activities, and accomplishments.
Authors
Leslie Hsu, Caitlin M. Andrews, John B. Bradford, Daniel D. Buscombe, Katherine J. Chase, Wesley M. Daniel, Jeanne M. Jones, Pam Fuller, Benjamin B. Mirus, Matthew E. Neilson, Hans W. Vraga, Jessica J. Walker, Dennis H. Walworth, Jonathan Warrick, Jake Weltzin, Daniel J. Wieferich, Nathan J. Wood
Progress toward a preliminary karst depression density map for the conterminous United States
Most methods for the assessment of sinkhole hazard susceptibility are predicated upon knowledge of pre-existing closed depressions in karst areas. In the United States (U.S.), inventories of existing karst depressions are piecemeal, and are often obtained through inconsistent methodologies applied at the state or county level and at various scales. Here, we present a first attempt at defining a ka
Authors
Daniel H. Doctor, Jeanne M. Jones, Nathan J. Wood, Jeff T. Falgout, Natalya Igorevna Rapstine
The Landsat Burned Area algorithm and products for the conterminous United States
Complete and accurate burned area map data are needed to document spatial and temporal patterns of fires, to quantify their drivers, and to assess the impacts on human and natural systems. In this study, we developed the Landsat Burned Area (BA) algorithm, an update from the Landsat Burned Area Essential Climate Variable (BAECV) algorithm. Here, we present the BA algorithm and products, changes re
Authors
Todd Hawbaker, Melanie K. Vanderhoof, Gail L. Schmidt, Yen-Ju G. Beal, Joshua J. Picotte, Joshua Takacs, Jeff T. Falgout, John L. Dwyer
Community for Data Integration 2018 annual report
The Community for Data Integration (CDI) is a community of practice whose purpose is to build the U.S. Geological Survey knowledge base in data integration. This annual report describes the various presentations, activities, and outcomes of the CDI monthly forums, working groups, trainings, and other CDI-sponsored events in fiscal year 2018. The report also describes the objectives of the 10 CDI-f
Authors
Leslie Hsu, Leah Colasuonno
Envisioning a national invasive species information framework
With a view toward creating a national Early Detection and Rapid Response Program (EDRR) program, the United States National Invasive Species Council Management Plan for 2016–2018 calls for a series of assessments of federal EDRR capacities, including the evaluation of “relevant federal information systems to provide the data and other information necessary for risk analyses/horizon scanning, rapi
Authors
Jamie K Reaser, Annie Simpson, Gerald Guala, Jeffrey Morisette, Pam Fuller
BbsAssistant: An R package for downloading and handling data and information from the North American Breeding Bird Survey
This R package contains functions for downloading and munging data from the U.S. Geological Surveys North American Breeding Bird Survey (BBS) via file transfer protocol (FTP)
(Pardieck, Ziolkowski Jr, Lutmerding, & Hudson, 2018; J. R. Sauer et al., 2017). This package was created to allow the user to bulk-download the BBS point count and related (e.g.,
route-level conditions) via FTP, and to quick
Authors
Jessica Leigh Burnett, Lyndsie S. Wszola, Gabriela Palomo-Muñoz
The power, potential, and pitfalls of open access biodiversity data in range size assessments: Lessons from the fishes
Geographic rarity is a driver of a species’ intrinsic risk of extinction. It encompasses multiple key components including range size, which is one of the most commonly measured estimates of geographic rarity. Range size estimates are often used to prioritize conservation efforts when there are multiple candidate species, because data for other components of rarity such as population size are spar
Authors
Abigail Benson
Measuring sustainability of seed-funded Earth science informatics projects
Short term funding is a common funding model for informatics projects. Funders are interested in maximizing the sustainability and accessibility of the outputs, but there are no commonly accepted practices to do so in the Earth sciences informatics field. We constructed and applied a framework for sustainability drawing from other disciplines that have more published work in sustainability of proj
Authors
Leslie Hsu, Vivian B. Hutchison, Madison Langseth
Improving Darwin Core for research and management of alien species
To improve the suitability of the Darwin Core standard for the research and management of alien species, the standard needs to express the native status of organisms, how well established they are and how they came to occupy a location. To facilitate this, we propose: 1. To adopt a controlled vocabulary for the existing Darwin Core term dwc:establishmentMeans 2. To elevate the pathway term from th
Authors
Quentin J. Groom, Peter Desmet, Lien Reyserhove, Tim Adriaens, Damiano Oldoni, Sonia Vanderhoeven, Steven J Baskauf, Arthur Chapman, Melodie McGeoch, Ramona Walls, John Wieczorek, John RU Wilson, Paula FF Zermoglio, Annie Simpson
Urban stormwater: An overlooked pathway of extensive mixed contaminants to surface and groundwaters in the United States
Increasing global reliance on stormwater control measures to reduce discharge to surface water, increase groundwater recharge, and minimize contaminant delivery to receiving waterbodies necessitates improved understanding of stormwater-contaminant profiles. A multi-agency study of organic and inorganic chemicals in urban stormwater from 50 runoff events at 21 sites across the United States demonst
Authors
Jason R. Masoner, Dana W. Kolpin, Isabelle M. Cozzarelli, Larry B. Barber, D.S. Burden, William T. Foreman, Kenneth J. Forshay, Edward Furlong, Justin F. Groves, Michelle Hladik, Matthew E. Hopton, Jeanne B. Jaeschke, Steffanie H. Keefe, David Krabbenhoft, Richard Lowrance, Kristin Romanok, David L. Rus, William R. Selbig, Brad Williams, Paul Bradley
By
Water Resources Mission Area, Science Synthesis, Analysis and Research Program, Contaminant Biology, Science Analytics and Synthesis (SAS) Program, Toxic Substances Hydrology, California Water Science Center, Central Midwest Water Science Center, New Jersey Water Science Center, Oklahoma-Texas Water Science Center, South Atlantic Water Science Center (SAWSC), Upper Midwest Environmental Sciences Center, Upper Midwest Water Science Center, Reston Biogeochemical Processes in Groundwater Laboratory
Global observational needs and resources for marine biodiversity
The diversity of life in the sea is critical to the health of ocean ecosystems that support living resources and therefore essential to the economic, nutritional, recreational, and health needs of billions of people. Yet there is evidence that the biodiversity of many marine habitats is being altered in response to a changing climate and human activity. Understanding this change, and forecasting w
Authors
Gabrielle Canonico, Pier Luigi Buttigieg, Enrique Montes, Frank E. Muller-Karger, Carol Stepien, Dawn J. Wright, Abigail Benson, Brian Helmuth, Mark John Costello, Isabel Sousa-Pinto, Hanieh Saeedi, Jan Newton, Ward Appeltans, Nina Bednaršek, Levente Bodrossy, Benjamin D. Best, Angelika Brandt, Kelly D Goodwin, Katrin Iken, Antonio C Marquez, Patricia Miloslavich, Martin Ostrowski, Woody Turner, Eric P Achterberg, Tom Barry, Omar DeFeo, Gregorio Bigatti, Lea-Anne Henry, Berta Ramiro-Sánchez, Pablo Durán, Telmo Morato, J. Murray Roberts, Ana Garcia-Alegre, Mar Sacau Cuadrado, Bramley Murton
Gap Analysis Project (GAP) Terrestrial Vertebrate Species Richness Maps for the Conterminous U.S.
The mission of the Gap Analysis Project (GAP) is to support national and regional assessments of the conservation status of vertebrate species and plant communities. This report explains conterminous United States species richness maps created by the U.S. Geological Survey for four major classes in the phylum Chordata: mammals, birds, reptiles, and amphibians. In this work, we focus on terrestrial
Authors
Kevin J. Gergely, Kenneth G. Boykin, Alexa McKerrow, Matthew J. Rubino, Nathan M. Tarr, Steven G. Williams