Robert (Scott) Cornman, Ph.D.
Biography
(Robert) Scott Cornman is a Biologist at the Fort Collins Science Center. He received a Ph.D. in Genetics from the University of Georgia. He is a genomics specialist focusing on the application of SNPs, RNA-Seq, and barcode sequencing to organismal ecology and conservation.
Education
- PhD Genetics/University of Georgia, 2006
- B.A. History/Rice University, 1992
Professional Experience
- 2015-present, Biologist, USGS FORT, Fort Collins, CO
- 2012-2015, Biologist, USGS LSC, Leetown, WV
- 2008-2012, Geneticist, USDA-ARS, Beltsville, MD
Science and Products
Molecular Genetics
The use of molecular genetics has become increasingly important in addressing wildlife conservation issues. In the Fort Collins Science Center Molecular Ecology Lab, scientists answer complex questions and conservation issues facing the management of the Nation's fish and wildlife resources. For example, FORT scientists can now locate genes that may contribute to a species' ability to respond...
Molecular Ecology Lab (MEL)
The Molecular Ecology Laboratory applies genetic and genomic technologies to address a variety of complex questions and conservation issues facing the management of the Nation's fish and wildlife resources. Together with our partners, we design and implement studies to document genetic diversity and the distribution of genetic variation among individuals, populations, and species. Information...
Genomics and Bioinformatics
Genetic analysis is increasingly used to understand ecosystem processes and inform conservation, management, and policy. I assist USGS researchers and their collaborators in the design, analysis, and interpretation of high-throughput genetic studies. Common applications include: detecting genes responsive to particular environmental stressors in a sentinel species or species of conservation...
Conservation Genomics
Conservation genomics is a new field of science that applies novel whole-genome sequencing technology to problems in conservation biology. Rapidly advancing molecular technologies are revolutionizing wildlife ecology, greatly expanding our understanding of wildlife and their interactions with the environment. In the same way that molecular tools such as microsatellites revolutionized wildlife...
Taxonomic composition of environmental DNA acquired by filtration from the St. Regis River, New York
Environmental DNA (eDNA) surveys have become important tools for monitoring aquatic biodiversity. Barcode sequencing of eDNA generates community profiles that, while potentially biased in both capture and amplification, can nonetheless yield high information content per unit cost. While factors affecting eDNA capture and amplification have been heavily studied, watershed-scale assessmen
Experimental analysis of Elliptio complanata transcriptional response to salt stress
The data set is a table of counts, with the rows being the transcripts detected in the samples in the experiment and the columns identifying the samples. Four mussles were exposed to normal freshwater and four mussels were exposed to high salinity (two ppt), for a period of seven days.
Provenance, classification, and abundance of RNA sequence fragments used to assess virus infections in honey bees, Apis mellifera
This dataset was used to assess the relative occurrence and titer of Deformed wing virus (DWV) and Varroa destructor virus 1 (VDV) in public RNA-seq accessions of honey bee using a rapid, kmer-based approach. The data highlight the utility of high-throughput sequencing to monitor viral polymorphisms and statistically test biological predictors of titer.
Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17α-ethinylestradiol)
Endocrine disrupting contaminants are of continuing concern for potentially contributing to reproductive dysfunction in largemouth and smallmouth bass in the Chesapeake Bay watershed (CBW) and elsewhere. Exposures to atrazine (ATR) have been hypothesized to have estrogenic effects on vertebrate endocrine systems. The incidence of intersex in male...
Leet, Jessica Kristin; Richter, Catherine A.; Cornman, Robert S.; Berninger, Jason P.; Bhandari, Ramji K.; Nicks, Diane K.; Zajicek, James L.; Blazer, Vicki S.; Tillitt, Donald E. Environmental gradients of selection for an alpine-obligate bird, the white-tailed ptarmigan (Lagopus leucura)
The warming climate will expose alpine species adapted to a highly seasonal, harsh environment to novel environmental conditions. A species can shift their distribution, acclimate, or adapt in response to a new climate. Alpine species have little suitable habitat to shift their distribution, and the limits of acclimation will likely be tested by...
Zimmerman, Shawna J; Aldridge, Cameron L.; Langin, Kathryn M.; Wann, Gregory T; Cornman, Robert S.; Oyler-McCance, Sara J. DNA metabarcoding of feces to infer summer diet of Pacific walruses
Environmental conditions in the Chukchi Sea are changing rapidly and may alter the abundance and distribution of marine species and their benthic prey. We used a metabarcoding approach to identify potentially important prey taxa from Pacific walrus (Odobenus rosmarus divergens) fecal samples (n = 87). Bivalvia was the most dominant class of...
Sonsthagen, Sarah A.; Jay, Chadwick V.; Cornman, Robert S.; Fischbach, Anthony S.; Grebmeier, Jacqueline M.; Talbot, Sandra L. An updated genetic marker for detection of Lake Sinai Virus and metagenetic applications
BackgroundLake Sinai Viruses (LSV) are common RNA viruses of honey bees (Apis mellifera) that frequently reach high abundance but are not linked to overt disease. LSVs are genetically heterogeneous and collectively widespread, but despite frequent detection in surveys, the ecological and geographic factors structuring their distribution in A...
Iwanowicz, Deborah D.; Wu-Smart, Judy Y.; Olgun, Tugce; Smart, Autumn; Otto, Clint R. V.; Lopez, Dawn; Evans, Jay D.; Cornman, Robert S.
Forage and habitat for pollinators in the northern Great Plains—Implications for U.S. Department of Agriculture conservation programs
Managed and wild pollinators are critical components of agricultural and natural systems. Despite the well-known value of insect pollinators to U.S. agriculture, Apis mellifera (Linnaeus, 1758; honey bees) and wild bees currently face numerous stressors that have resulted in declining health. These declines have engendered support for pollinator...
Otto, Clint R. V.; Smart, Autumn; Cornman, Robert S.; Simanonok, Michael; Iwanowicz, Deborah D. Draft genome of an adomavirus associated with raised mucoid skin lesions on smallmouth bass (Micropterus dolomieu)
Raised mucoid skin lesions have been observed on smallmouth bass (Micropterus dolomieu) for years. Here we report a draft genome of a novel adomavirus (Micropterus dolomieu adomavirus 2) associated with this disease. The circular genome is 17,561 bp and most similar to that of alpha-Adomaviruses.
Iwanowicz, Luke; Young, Kelsey T.; Adams, Cynthia R.; Blazer, Vicki S.; Smith, Geoffrey; Cornman, Robert S. Characterizing range-wide population divergence in an alpine-endemic bird: A comparison of genetic and genomic approaches
The delineation of intraspecific units that are evolutionarily and demographically distinct is an important step in the development of species-specific management plans. Neutral genetic variation has served as the primary data source for delineating “evolutionarily significant units,” but with recent advances in genomic technology, we now have an...
Langin, Kathryn; Aldridge, Cameron L.; Fike, Jennifer A.; Cornman, Robert S.; Martin, Kathy M; Wann, Greg T; Seglund, Amy E; Schroeder, Michael A; Benson, David P; Fedy, Brad C.; Young, Jessica R.; Wilson, Scott D.; Wolfe, Don H; Braun, Clait E.; Oyler-McCance, Sara J. Relative abundance and molecular evolution of Lake Sinai Virus (Sinaivirus) clades
Lake Sinai Viruses (Sinaivirus) are commonly detected in honey bees (Apis mellifera) but no disease phenotypes or fitness consequences have yet been demonstrated. This viral group is genetically diverse, lacks obvious geographic structure, and multiple lineages can co-infect individual bees. While phylogenetic analyses have been performed, the...
Cornman, Robert S. Molecular characterization of Bathymodiolus mussels and gill symbionts associated with chemosynthetic habitats from the U.S. Atlantic margin
Mussels of the genus Bathymodiolus are among the most widespread colonizers of hydrothermal vent and cold seep environments, sustained by endosymbiosis with chemosynthetic bacteria. Presumed species of Bathymodiolus are abundant at newly discovered cold seeps on the Mid-Atlantic continental slope, however morphological taxonomy is challenging, and...
Coykendall, Dolly (Katharine); Cornman, Robert S.; Prouty, Nancy G.; Brooke, Sandra; Demopoulos, Amanda W. J.; Morrison, Cheryl L. Isolation, characterization and molecular identification of a novel aquareovirus that infects the endangered fountain darter, Etheostoma fonticola
The fountain darter Etheostoma fonticola (FOD) is a federally endangered fish listed under the US Endangered Species Act. Here, we identified and characterized a novel aquareovirus isolated from wild fountain darters inhabiting the San Marcos River. This virus was propagated in Chinook salmon embryo (CHSE)-214, rainbow trout gonad-2 and...
Iwanowicz, Luke R.; Iwanowicz, Deborah D.; Adams, Cynthia R.; Lewis, Teresa; Brandt, Tom; Sanders, Lakyn R.; Cornman, Robert S. An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA
Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more...
Cornman, Robert S.; McKenna, James E.; Fike, Jennifer A.; Oyler-McCance, Sara J.; Johnson, Robin Genomic evolution, recombination, and inter-strain diversity of chelonid alphaherpesvirus 5 from Florida and Hawaii green sea turtles with fibropapillomatosis
Chelonid alphaherpesvirus 5 (ChHV5) is a herpesvirus associated with fibropapillomatosis (FP) in sea turtles worldwide. Single-locus typing has previously shown differentiation between Atlantic and Pacific strains of this virus, with low variation within each geographic clade. However, a lack of multi-locus genomic sequence data hinders...
Morrison, Cheryl L.; Iwanowicz, Luke R.; Work, Thierry M.; Fahsbender, Elizabeth; Breitbart, Mya; Adams, Cynthia R.; Iwanowicz, Deborah D.; Sanders, Lakyn; Ackermann, Mathias; Cornman, Robert S.