Scott Cornman is a Biologist at the Fort Collins Science Center.
(Robert) Scott Cornman is a Biologist at the Fort Collins Science Center. He received a Ph.D. in Genetics from the University of Georgia. He is a genomics specialist focusing on the application of SNPs, RNA-Seq, and barcode sequencing to organismal ecology and conservation.
Professional Experience
2015-present, Biologist, USGS FORT, Fort Collins, CO
2012-2015, Biologist, USGS LSC, Leetown, WV
2008-2012, Geneticist, USDA-ARS, Beltsville, MD
Education and Certifications
PhD Genetics/University of Georgia, 2006
B.A. History/Rice University, 1992
Science and Products
Molecular Genetics
The use of molecular genetics has become increasingly important in addressing wildlife conservation issues. In the Fort Collins Science Center Molecular Ecology Lab, scientists answer complex questions and conservation issues facing the management of the Nation's fish and wildlife resources. For example, FORT scientists can now locate genes that may contribute to a species' ability to respond to...
Molecular Ecology Lab (MEL)
The Molecular Ecology Laboratory applies genetic and genomic technologies to address a variety of complex questions and conservation issues facing the management of the Nation's fish and wildlife resources. Together with our partners, we design and implement studies to document genetic diversity and the distribution of genetic variation among individuals, populations, and species. Information from...
Genomics and Bioinformatics
Genetic analysis is increasingly used to understand ecosystem processes and inform conservation, management, and policy. I assist USGS researchers and their collaborators in the design, analysis, and interpretation of high-throughput genetic studies. Common applications include: detecting genes responsive to particular environmental stressors in a sentinel species or species of conservation...
Conservation Genomics
Conservation genomics is a new field of science that applies novel whole-genome sequencing technology to problems in conservation biology. Rapidly advancing molecular technologies are revolutionizing wildlife ecology, greatly expanding our understanding of wildlife and their interactions with the environment. In the same way that molecular tools such as microsatellites revolutionized wildlife...
Filter Total Items: 23
Whole genome sequencing of three North American large-bodied birds
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository
Reduced representation sequencing and genotyping of Arizona Toads (Anaxyrus microscaphus) from the southwestern United States
The dataset consists of genotypes (diploid base calls at variant sites) at 3,601 anonymous sites of the Arizona Toad (Anaxyrus microscaphus) nuclear genome. The genotyped samples are representative of the range of the species and its major population units, and the genotyped loci have a high degree of completeness.
This data release consists of several files:
1. sample.metadata.txt, which contain
Occurrences of Apis mellifera filamentous virus (AmFV) sequences in public accessions of Apis mellifera and Varroa destructor
Honey bees (Apis mellifera), a critical agricultural pollinator in many areas, have a high rate of infection with a large DNA virus, Apis mellifera filamentous virus (AmFV), yet little is known about its ecology or impact on honey bee colonies, other than its ubiquity and apparent low virulence. This study scanned over 5,000 public data sets to detect AmFV sequences in honey bees as well as a para
Voucher and metagenetic sequencing of DNA barcodes of wild-collected bees (Apoidea) from Iowa, USA
High-throughput methods for identification of pollinator taxa are desirable to improve our understanding of pollinator distributions, population trends, and ecology. Genetic sequencing of taxonomically informative 'barcode' loci is one high-throughput strategy, which can be applied to individual specimens using Sanger technology and to complex mixtures using metabarcoding technology. This study ge
Metabarcode sequencing of aquatic environmental DNA from the Potomac River Watershed, 2015-2020
Biological indicator taxa have long been used for integrative assessments of water quality, particularly benthic invertebrate groups such as arthropods. While standardized protocols have been developed to calculate 'biological index' scores based on the abundances of these taxa, such systems are challenging to implement at large scales due to the sampling effort required, taxonomic expertise neede
A reference genome assembly for the endangered Aga or Mariana Crow (Corvus kubaryi)
The Aga, also known as the Mariana Crow, is an endangered endemic crow of the Northern Mariana Islands, a Commonwealth of the United States of America. The only known population currently extant is on the island of Rota and has been in decline over the past two decades. Unknown pathogens are among the factors that may be contributing to this decline. To support metagenomic and transcriptomic analy
Genomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms
The fathead minnow (Pimephales promelas) is a key model of vertebrate toxicity. Standardized tests of toxicity in fathead minnow have been developed to support regulatory science, and much is known about the response of the species to various environmental pollutants. However, there is little data on genetic variation within the species, despite the potential influence of genetic background on tox
qPCR Results for An Assessment of Naegleria fowleri in Grand Teton National Park, Wyoming
In 2016, a multidisciplinary team from the U.S. Geological Survey Wyoming-Montana Water Science Center, National Park Service, The Centers for Disease Control and Prevention, and Montana State University’s Department of Microbiology and Immunology in cooperation with the Teton Conservation District, initiated a small study to document the presence or absence of Naegleria fowleri at several hot spr
Gene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis
Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus, or synonymously, Aeorestes cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of
Hepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17B.-Trenbolone
The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17B. hydroxyestra 4,9,11 trien-3-one, trenbolone (17B.T - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and liver transcr
Genetic variation in hoary bats (Lasiurus cinereus) assessed from archived samples
Hoary bats are among the bat species most commonly killed by turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of census population size if other factors affecti
Sample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information and SNP genotypes for populations of Gunnison Sage-grouse across the species' range. This data was collected in order to examine patterns of adaptive genetic variation in Gunnison Sage-grouse. The data is archived in GenBank at the following URL https://www.ncbi.nlm.nih.gov/bioproject/517770.
Filter Total Items: 45
Data mining reveals tissue-specific expression and host lineage-associated forms of Apis mellifera filamentous virus
Apis mellifera filamentous virus (AmFV) is a large double-stranded DNA virus of uncertain phylogenetic position that infects honey bees (Apis mellifera). Little is known about AmFV evolution or molecular aspects of infection. Accurate annotation of open-reading frames (ORFs) is challenged by weak homology to other known viruses. This study was undertaken to evaluate ORFs (including coding-frame co
Authors
Robert S. Cornman
Fecal metabarcoding of the endangered Pacific pocket mouse (Perognathus longimembris pacificus) reveals a diverse and forb rich diet that reflects local habitat availability
Information on diet breadth and preference can assist in understanding links between food resources and population growth and inform habitat restoration for rare herbivores. We assessed the diet of the endangered Pacific pocket mouse using metabarcoding of fecal samples and compared it to plant community composition in long-term study plots in two populations on Marine Corps Base Camp Pendleton, S
Authors
A. G. Vandergast, Cheryl S. Brehme, Deborah D. Iwanowicz, Robert S. Cornman, Devin T. Adsit-Morris, Robert N. Fisher
Assessing arthropod diversity metrics derived from stream environmental DNA: Spatiotemporal variation and paired comparisons with manual sampling
BackgroundBenthic invertebrate (BI) surveys have been widely used to characterize freshwater environmental quality but can be challenging to implement at desired spatial scales and frequency. Environmental DNA (eDNA) allows an alternative BI survey approach, one that can potentially be implemented more rapidly and cheaply than traditional methods.MethodsWe evaluated eDNA analogs of BI metrics in t
Authors
Aaron Aunins, Sara J. Mueller, Jennifer A. Fike, Robert S. Cornman
Comparison of microscopy and metabarcoding to identify pollen used by the critically endangered rusty patched bumble bee, Bombus affinis
Taxonomic analysis of pollen collected by bees can provide insights into their host plant use, providing information about the plant species selected for targeted conservation strategies. The two main identification approaches used are morphological analysis of pollen samples affixed to microscope slides (i.e., microscopic palynology) and molecular analysis of samples. Both methods are widely used
Authors
Michael P. Simanonok, Deborah D. Iwanowicz, Clayton D Raines, Thomas J. Wood, Rufus Isaacs, Robert S. Cornman, Clint R.V. Otto
Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas
BackgroundThe fathead minnow (Pimephales promelas) is a model species for toxicological research. A high-quality genome reference sequence is available, and genomic methods are increasingly used in toxicological studies of the species. However, phylogenetic relationships within the genus remain incompletely known and little population-genomic data are available for fathead minnow despite the poten
Authors
Katy E. Klymus, Robert A. Hrabik, Nathan Thompson, Robert S. Cornman
Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny
BackgroundBats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats to wind turb
Authors
Robert S. Cornman, Paul M. Cryan
Influence of permafrost type and site history on losses of permafrost carbon after thaw
We quantified permafrost peat plateau and post-thaw carbon (C) stocks across a chronosequence in Interior Alaska to evaluate the amount of C lost with thaw. Macrofossil reconstructions revealed three stratigraphic layers of peat: (1) a base layer of fen/marsh peat, (2) peat from a forested peat plateau (with permafrost) and, (3) collapse-scar bog peat (at sites where permafrost thaw has occurred).
Authors
Kristen L. Manies, Miriam C. Jones, Mark Waldrop, Mary-Catherine Leewis, Christopher C. Fuller, Robert S. Cornman, Kristen Hoefke
Honey bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers
Protein derived from pollen is an essential component of healthy bee diets. Protein content in honey bee foraged-pollen varies temporally and spatially, but the drivers underlying this variation remain poorly characterized. We assessed the temporal and spatial variation in honey bee collected pollen in 12 Michigan apiaries over 3 summers (2015–2017). We simultaneously monitored forage in flowering
Authors
Gabriela Quinlan, Megan Milbrath, Clint R.V. Otto, Autumn Smart, Deborah Iwanowicz, Rufus Isaacs, Robert S. Cornman
Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone
Endocrine-disrupting chemicals can cause transcriptomic changes that may disrupt biological processes associated with reproductive function including metabolism, transport, and cell growth. We investigated effects from in ovo and dietary exposure to 17β-trenbolone (at 0, 1, and 10 ppm) on the Japanese quail (Coturnix japonica) hepatic transcriptome. Our objectives were to identify differentially e
Authors
Krittika Mittal, Paula F. P. Henry, Robert S. Cornman, Catherine M. Maddox, Niladri Basu, Natalie K. Karouna-Renier
Historical effective population size of North American hoary bat (Lasiurus cinereus) and challenges to estimating trends in contemporary effective breeding population size from archived samples
BackgroundHoary bats (Lasiurus cinereus) are among the bat species most commonly killed by wind turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of changing cen
Authors
Robert S. Cornman, Jennifer A. Fike, Sara J. Oyler-McCance, Paul M. Cryan
Genome sequences of 26 white sucker hepatitis B virus isolates from white sucker, catostomus commersonii, inhabiting transboundary waters from Alberta, Canada, to the Great Lakes, USA
We report 26 genomes of the white sucker hepatitis B virus (WSHBV) from the white sucker, Catostomus commersonii. Genome length ranged from 3541 to 3543 bp and nucleotide identity was 96.7% or greater across genomes. This work suggests a geographical range of this virus that minimally extends from the Athabasca River, Alberta, Canada to the Great Lakes, USA.
Authors
Cynthia R. Adams, Vicki S. Blazer, Jim Sherry, Robert S. Cornman, Luke R. Iwanowicz
Composition and distribution of fish environmental DNA in an Adirondack watershed
BackgroundEnvironmental DNA (eDNA) surveys are appealing options for monitoring aquatic biodiversity. While factors affecting eDNA persistence, capture and amplification have been heavily studied, watershed-scale surveys of fish communities and our confidence in such need further exploration.MethodsWe characterized fish eDNA compositions using rapid, low-volume filtering with replicate and control
Authors
Robert S. Cornman, James E. McKenna, Jennifer A. Fike
Science and Products
- Science
Molecular Genetics
The use of molecular genetics has become increasingly important in addressing wildlife conservation issues. In the Fort Collins Science Center Molecular Ecology Lab, scientists answer complex questions and conservation issues facing the management of the Nation's fish and wildlife resources. For example, FORT scientists can now locate genes that may contribute to a species' ability to respond to...Molecular Ecology Lab (MEL)
The Molecular Ecology Laboratory applies genetic and genomic technologies to address a variety of complex questions and conservation issues facing the management of the Nation's fish and wildlife resources. Together with our partners, we design and implement studies to document genetic diversity and the distribution of genetic variation among individuals, populations, and species. Information from...Genomics and Bioinformatics
Genetic analysis is increasingly used to understand ecosystem processes and inform conservation, management, and policy. I assist USGS researchers and their collaborators in the design, analysis, and interpretation of high-throughput genetic studies. Common applications include: detecting genes responsive to particular environmental stressors in a sentinel species or species of conservation...Conservation Genomics
Conservation genomics is a new field of science that applies novel whole-genome sequencing technology to problems in conservation biology. Rapidly advancing molecular technologies are revolutionizing wildlife ecology, greatly expanding our understanding of wildlife and their interactions with the environment. In the same way that molecular tools such as microsatellites revolutionized wildlife... - Data
Filter Total Items: 23
Whole genome sequencing of three North American large-bodied birds
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repositoryReduced representation sequencing and genotyping of Arizona Toads (Anaxyrus microscaphus) from the southwestern United States
The dataset consists of genotypes (diploid base calls at variant sites) at 3,601 anonymous sites of the Arizona Toad (Anaxyrus microscaphus) nuclear genome. The genotyped samples are representative of the range of the species and its major population units, and the genotyped loci have a high degree of completeness. This data release consists of several files: 1. sample.metadata.txt, which containOccurrences of Apis mellifera filamentous virus (AmFV) sequences in public accessions of Apis mellifera and Varroa destructor
Honey bees (Apis mellifera), a critical agricultural pollinator in many areas, have a high rate of infection with a large DNA virus, Apis mellifera filamentous virus (AmFV), yet little is known about its ecology or impact on honey bee colonies, other than its ubiquity and apparent low virulence. This study scanned over 5,000 public data sets to detect AmFV sequences in honey bees as well as a paraVoucher and metagenetic sequencing of DNA barcodes of wild-collected bees (Apoidea) from Iowa, USA
High-throughput methods for identification of pollinator taxa are desirable to improve our understanding of pollinator distributions, population trends, and ecology. Genetic sequencing of taxonomically informative 'barcode' loci is one high-throughput strategy, which can be applied to individual specimens using Sanger technology and to complex mixtures using metabarcoding technology. This study geMetabarcode sequencing of aquatic environmental DNA from the Potomac River Watershed, 2015-2020
Biological indicator taxa have long been used for integrative assessments of water quality, particularly benthic invertebrate groups such as arthropods. While standardized protocols have been developed to calculate 'biological index' scores based on the abundances of these taxa, such systems are challenging to implement at large scales due to the sampling effort required, taxonomic expertise needeA reference genome assembly for the endangered Aga or Mariana Crow (Corvus kubaryi)
The Aga, also known as the Mariana Crow, is an endangered endemic crow of the Northern Mariana Islands, a Commonwealth of the United States of America. The only known population currently extant is on the island of Rota and has been in decline over the past two decades. Unknown pathogens are among the factors that may be contributing to this decline. To support metagenomic and transcriptomic analyGenomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms
The fathead minnow (Pimephales promelas) is a key model of vertebrate toxicity. Standardized tests of toxicity in fathead minnow have been developed to support regulatory science, and much is known about the response of the species to various environmental pollutants. However, there is little data on genetic variation within the species, despite the potential influence of genetic background on toxqPCR Results for An Assessment of Naegleria fowleri in Grand Teton National Park, Wyoming
In 2016, a multidisciplinary team from the U.S. Geological Survey Wyoming-Montana Water Science Center, National Park Service, The Centers for Disease Control and Prevention, and Montana State University’s Department of Microbiology and Immunology in cooperation with the Teton Conservation District, initiated a small study to document the presence or absence of Naegleria fowleri at several hot sprGene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis
Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus, or synonymously, Aeorestes cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility ofHepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17B.-Trenbolone
The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17B. hydroxyestra 4,9,11 trien-3-one, trenbolone (17B.T - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and liver transcrGenetic variation in hoary bats (Lasiurus cinereus) assessed from archived samples
Hoary bats are among the bat species most commonly killed by turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of census population size if other factors affectiSample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information and SNP genotypes for populations of Gunnison Sage-grouse across the species' range. This data was collected in order to examine patterns of adaptive genetic variation in Gunnison Sage-grouse. The data is archived in GenBank at the following URL https://www.ncbi.nlm.nih.gov/bioproject/517770. - Publications
Filter Total Items: 45
Data mining reveals tissue-specific expression and host lineage-associated forms of Apis mellifera filamentous virus
Apis mellifera filamentous virus (AmFV) is a large double-stranded DNA virus of uncertain phylogenetic position that infects honey bees (Apis mellifera). Little is known about AmFV evolution or molecular aspects of infection. Accurate annotation of open-reading frames (ORFs) is challenged by weak homology to other known viruses. This study was undertaken to evaluate ORFs (including coding-frame coAuthorsRobert S. CornmanFecal metabarcoding of the endangered Pacific pocket mouse (Perognathus longimembris pacificus) reveals a diverse and forb rich diet that reflects local habitat availability
Information on diet breadth and preference can assist in understanding links between food resources and population growth and inform habitat restoration for rare herbivores. We assessed the diet of the endangered Pacific pocket mouse using metabarcoding of fecal samples and compared it to plant community composition in long-term study plots in two populations on Marine Corps Base Camp Pendleton, SAuthorsA. G. Vandergast, Cheryl S. Brehme, Deborah D. Iwanowicz, Robert S. Cornman, Devin T. Adsit-Morris, Robert N. FisherAssessing arthropod diversity metrics derived from stream environmental DNA: Spatiotemporal variation and paired comparisons with manual sampling
BackgroundBenthic invertebrate (BI) surveys have been widely used to characterize freshwater environmental quality but can be challenging to implement at desired spatial scales and frequency. Environmental DNA (eDNA) allows an alternative BI survey approach, one that can potentially be implemented more rapidly and cheaply than traditional methods.MethodsWe evaluated eDNA analogs of BI metrics in tAuthorsAaron Aunins, Sara J. Mueller, Jennifer A. Fike, Robert S. CornmanComparison of microscopy and metabarcoding to identify pollen used by the critically endangered rusty patched bumble bee, Bombus affinis
Taxonomic analysis of pollen collected by bees can provide insights into their host plant use, providing information about the plant species selected for targeted conservation strategies. The two main identification approaches used are morphological analysis of pollen samples affixed to microscope slides (i.e., microscopic palynology) and molecular analysis of samples. Both methods are widely usedAuthorsMichael P. Simanonok, Deborah D. Iwanowicz, Clayton D Raines, Thomas J. Wood, Rufus Isaacs, Robert S. Cornman, Clint R.V. OttoGenome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas
BackgroundThe fathead minnow (Pimephales promelas) is a model species for toxicological research. A high-quality genome reference sequence is available, and genomic methods are increasingly used in toxicological studies of the species. However, phylogenetic relationships within the genus remain incompletely known and little population-genomic data are available for fathead minnow despite the potenAuthorsKaty E. Klymus, Robert A. Hrabik, Nathan Thompson, Robert S. CornmanPositively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny
BackgroundBats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats to wind turbAuthorsRobert S. Cornman, Paul M. CryanInfluence of permafrost type and site history on losses of permafrost carbon after thaw
We quantified permafrost peat plateau and post-thaw carbon (C) stocks across a chronosequence in Interior Alaska to evaluate the amount of C lost with thaw. Macrofossil reconstructions revealed three stratigraphic layers of peat: (1) a base layer of fen/marsh peat, (2) peat from a forested peat plateau (with permafrost) and, (3) collapse-scar bog peat (at sites where permafrost thaw has occurred).AuthorsKristen L. Manies, Miriam C. Jones, Mark Waldrop, Mary-Catherine Leewis, Christopher C. Fuller, Robert S. Cornman, Kristen HoefkeHoney bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers
Protein derived from pollen is an essential component of healthy bee diets. Protein content in honey bee foraged-pollen varies temporally and spatially, but the drivers underlying this variation remain poorly characterized. We assessed the temporal and spatial variation in honey bee collected pollen in 12 Michigan apiaries over 3 summers (2015–2017). We simultaneously monitored forage in floweringAuthorsGabriela Quinlan, Megan Milbrath, Clint R.V. Otto, Autumn Smart, Deborah Iwanowicz, Rufus Isaacs, Robert S. CornmanSex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone
Endocrine-disrupting chemicals can cause transcriptomic changes that may disrupt biological processes associated with reproductive function including metabolism, transport, and cell growth. We investigated effects from in ovo and dietary exposure to 17β-trenbolone (at 0, 1, and 10 ppm) on the Japanese quail (Coturnix japonica) hepatic transcriptome. Our objectives were to identify differentially eAuthorsKrittika Mittal, Paula F. P. Henry, Robert S. Cornman, Catherine M. Maddox, Niladri Basu, Natalie K. Karouna-RenierHistorical effective population size of North American hoary bat (Lasiurus cinereus) and challenges to estimating trends in contemporary effective breeding population size from archived samples
BackgroundHoary bats (Lasiurus cinereus) are among the bat species most commonly killed by wind turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of changing cenAuthorsRobert S. Cornman, Jennifer A. Fike, Sara J. Oyler-McCance, Paul M. CryanGenome sequences of 26 white sucker hepatitis B virus isolates from white sucker, catostomus commersonii, inhabiting transboundary waters from Alberta, Canada, to the Great Lakes, USA
We report 26 genomes of the white sucker hepatitis B virus (WSHBV) from the white sucker, Catostomus commersonii. Genome length ranged from 3541 to 3543 bp and nucleotide identity was 96.7% or greater across genomes. This work suggests a geographical range of this virus that minimally extends from the Athabasca River, Alberta, Canada to the Great Lakes, USA.AuthorsCynthia R. Adams, Vicki S. Blazer, Jim Sherry, Robert S. Cornman, Luke R. IwanowiczComposition and distribution of fish environmental DNA in an Adirondack watershed
BackgroundEnvironmental DNA (eDNA) surveys are appealing options for monitoring aquatic biodiversity. While factors affecting eDNA persistence, capture and amplification have been heavily studied, watershed-scale surveys of fish communities and our confidence in such need further exploration.MethodsWe characterized fish eDNA compositions using rapid, low-volume filtering with replicate and controlAuthorsRobert S. Cornman, James E. McKenna, Jennifer A. Fike - News