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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42975

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis, is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats...
Authors
Anusha P. Bishop, Erin P. Westeen, Michael L. Yuan, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P. A. Marimuthu, Oanh Nguyen, Noravit Chumchim, Erin Toffelmier, Robert N. Fisher, H. Bradley Shaffer, Ian J. Wang

Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control

The global transfer of aquatic biota outside their native geographical range has resulted in dramatic changes to biological communities. Many nonnative species introductions are facilitated by human activity and then spread intra-continentally through connected watersheds once established. Resource managers therefore utilize multiple control technologies, such as management chemicals...
Authors
Gavin N. Saari

Historical DNA reveals climate adaptation in an endangered songbird Historical DNA reveals climate adaptation in an endangered songbird

To cope with climate change, species may shift their distributions or adapt in situ to changing environmental conditions. However, clear examples of genetic changes via adaptation are limited. We explore evolutionary responses to climate change in the endangered southwestern willow flycatcher (Empidonax traillii extimus) through whole-genome comparisons between historical specimens...
Authors
Sheela P. Turbek, Christen Bossu, Christine Rayne, Cristian Gruppi, Barbara E. Kus, Mary J. Whitfield, Thomas B. Smith, Eben H. Paxton, Rachael A. Bay, Kristen C Ruegg

Synthesis of larval lamprey responses to dewatering: State of the science, critical uncertainties, and management implications Synthesis of larval lamprey responses to dewatering: State of the science, critical uncertainties, and management implications

Objective Dewatering of fine sediments in rivers and streams can kill many thousands of larval lampreys (order Petromyzontiformes) that are burrowed in these habitats. The larval life stage for lampreys lasts 3–10 years, and because larvae often aggregate in large numbers, negative impacts from dewatering could potentially deplete local populations and affect multiple year-classes...
Authors
Theresa L. Liedtke, Julianne E. Harris, Monica R. Blanchard, Joseph J. Skalicky, Ann B. Grote

The Colorado River water crisis: Its origin and the future The Colorado River water crisis: Its origin and the future

During much of the 21st century, natural runoff in the Colorado River basin has declined, while consumption has remained relatively constant, leading to historically low reservoir storage. Between January 2000 and April 2023, the amount of water stored in Lake Mead and Lake Powell, the two largest reservoirs in the United States, declined by 33.5 million acre feet (41.3 billion cubic...
Authors
John C. Schmidt, Charles B. Yackulic, Eric Kuhn

Is chemical control for crayfish in hatchery fish shipments practical? Is chemical control for crayfish in hatchery fish shipments practical?

Invasive crayfish (family Cambaridae) displace native crayfish species and alter aquatic habitat, community structure, and ecosystem function. We evaluated whether chemical control can be a reliable control agent for crayfish to ensure that shipments from fish hatcheries did not result in new infestations of invasive crayfish. A series of acute (≤1 h) toxicity tests were conducted to...
Authors
Ann Allert, Daniel J. Westrich, David W. Whites, Katrina Knott, Nathan Storts, Robert J. DiStefano

Northwest Forest Plan — The first 25 years (1994–2018): Watershed condition status and trends Northwest Forest Plan — The first 25 years (1994–2018): Watershed condition status and trends

This report describes status and trends in watershed condition across the Northwest Forest Plan (NWFP) area over the first 25 years since its inception in 1994. The program charged with this task is the Aquatic and Riparian Effectiveness Monitoring Program (AREMP), which has assembled information from field data collection, spatial datasets, and a host of landscape models to evaluate the...
Authors
Jason Dunham, Christine Hirsch, Sean Gordon, Rebecca L. Flitcroft, Nathan Chelgren, Marcia N. Snyder, David P Hockman-Wert, Gordon H. Reeves, Heidi V. Andersen, Scott K. Anderson, William A. Battaglin, Tom A. Black, Jason Brown, Shannon Claeson, Lauren Hay, Emily D. Heaston, Charles H. Luce, Nathan Nelson, Colin Penn, Mark Raggon

Pathology and infectious agents of unionid mussels: A primer for pathologists in disease surveillance and investigation of mortality events Pathology and infectious agents of unionid mussels: A primer for pathologists in disease surveillance and investigation of mortality events

Freshwater mussels are one of the most imperiled groups of organisms in the world, and more than 30 species have gone extinct in the last century. While habitat alteration and destruction have contributed to the declines, the role of disease in mortality events is unclear. In an effort to involve veterinary pathologists in disease surveillance and the investigation of freshwater mussel...
Authors
Susan Knowles, Michelle Dennis, Andrew McElwain, Eric Leis, Jordan C. Richard

A comprehensive plan for in-water sea turtle data collection in the US Gulf of Mexico A comprehensive plan for in-water sea turtle data collection in the US Gulf of Mexico

The Deepwater Horizon Open Ocean Trustee Implementation Group (OO TIG) released a Final Open Ocean Restoration Plan 2 in 2019, which included a project titled Developing a Gulf-wide Comprehensive Plan for In-water Sea Turtle Data Collection. This document, A Comprehensive Plan for In-water Sea Turtle Data Collection in the US Gulf of Mexico (Plan), is the culmination of that OO TIG...
Authors
Kristen Hart, Pamela T. Plotkin, Christopher Sasso, Blair E. Witherington

Implications of tree expansion in shrubland ecosystems for two generalist avian predators Implications of tree expansion in shrubland ecosystems for two generalist avian predators

Shrublands globally have undergone structural changes due to plant invasions, including the expansion of native trees. Removal of native conifer trees, especially juniper (Juniperus spp.), is occurring across the Great Basin of the western U.S. to support declining sagebrush (Artemisia spp.) habitats and associated wildlife species, such as greater sage-grouse (Centrocercus urophasianus)...
Authors
Aaron C. Young, Todd E. Katzner, Douglas J. Shinneman, Tracey N. Johnson

Dynamic spatiotemporal modeling of a habitat-defining plant species to support wildlife management at regional scales Dynamic spatiotemporal modeling of a habitat-defining plant species to support wildlife management at regional scales

Sagebrush (Artemisia spp.) ecosystems provide critical habitat for the Greater sage-grouse (Centrocercus urophasianus), a species of conservation concern. Thus, future loss of sagebrush habitat because of land use change and global climate change is of concern. Here, we use a dynamic additive spatiotemporal model to estimate the effects of climate on sagebrush cover dynamics at 32 sage...
Authors
Andrew T. Tredennick, Adrian P. Monroe, Thomas J. Prebyl, John Lombardi, Cameron L. Aldridge

Modeling the spatial distribution of carcasses of eagles killed by wind turbines Modeling the spatial distribution of carcasses of eagles killed by wind turbines

Currently, the US Fish and Wildlife Service makes eagle permitting and management decisions nationwide based on a limited understanding of the impacts of wind power generation on eagles, and the factors that influence risk at a given facility. Accurate estimates of eagle mortality at wind power facilities form the basis for comparing the magnitudes of mortality rates in different areas...
Authors
Manuela Huso, Daniel Dalthorp, Jeffrey Michael Mintz, Torgeir Nygard, Roel May
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