In 1992, the USGS began studying possible causes for the change in trophic status of Upper Klamath Lake. Since then research has expanded to include groundwater, geomorphology, streamflow forecasting, and fish ecology.
Upper Klamath Lake is a large, shallow lake in southern Oregon that feeds the Klamath River, which flows through California into the Pacific Ocean. The lake is naturally rich in nutrients (i.e., eutrophic), but has become hypereutrophic during the 20th century. Nutrient levels have been high enough to cause annual, extensive blue-green algae blooms each summer since the 1930's. Generally, a eutrophic lake can support diverse plant and animal communities.
Water-quality problems that coincide with the blooms and subsequent decay of dead algae include foul odors, increased acidity, dissolved oxygen concentrations that fluctuate from supersaturation to depletion, elevated ammonia concentrations, and occasionally extensive fish kills. The degraded water quality is a contributing factor in the decline in populations of the shortnose sucker, Chasmistes brevirostris, and the Lost River sucker, Deltistes luxatus, both listed as Federally Endangered Species.
Research by USGS and others continues to monitor and assess conditions in Upper Klamath Lake and the surrounding watershed.
Below are science projects associated with the Klamath Basin.
Klamath Dam Removal Studies
Vertical Hydraulic Gradient at the Sediment-Water Interface in Upper Klamath Lake
Upper Klamath River Basin Forecasts
Sediment Fingerprinting in the Upper Klamath Basin
Upper Klamath Basin Groundwater Studies
Wood River Shoreline Management Tool
Water Quality in Keno Reach of the Klamath River
Future Water Clarity and Dissolved Oxygen in Crater Lake
Geomorphology of the Sprague River Basin
Nutrient and Sediment Loading to Upper Klamath Lake
Nutrient Loading to Lost River and Klamath River Subbasins
Below are data releases from the Klamath Basin.
USGS Klamath River Basin Water-Quality Mapper
This map interface represents continuous and discrete water-quality data collected by Bureau of Reclamation and USGS at Klamath Basin sites. The USGS and Reclamation data stored in NWIS are accessible using existing tools such as NWIS-Web and the USGS Data Grapher system.
Klamath Marsh January Through June Maximum Surface Water Extent, 1985-2021
Klamath Marsh January Through May Maximum Surface Water Extent, 1985-2021 (ver. 2.0, March 2022)
Phytoplankton and Zooplankton Data for Upper Klamath Lake, Oregon, 2020
Phytoplankton Data for Upper Klamath River, Oregon 2016 - 2020
Depth-to-water data and calculated vertical hydraulic gradient at the sediment-water interface in Upper Klamath Lake, Oregon, 2017
Phytoplankton and Zooplankton Data for Upper Klamath Lake and River, Oregon, 2019
National Water Information System (NWIS) - Oregon
National Water Information System: Mapper (Oregon)
Data from an Analysis of Dissolved Organic Matter in the Upper Klamath River, Lost River, and Klamath Straits Drain, Oregon and California, 201316
Using High-Throughput DNA Sequencing, Genetic Fingerprinting, and Quantitative PCR as Tools for Monitoring Bloom-Forming and Toxigenic Cyanobacteria in Upper Klamath Lake, Oregon, 2013 and 2014
Upper Klamath and Agency Lakes May/June 1996 bathymetric mapping project
Oregon Streamflow Data by Basin
View real-time streamflow data in Oregon river basins.
Klamath River Water-Quality Sites
Klamath River water-quality monitoring -- Keno Reach monitors
Below are publications associated with the Klamath Basin.
Summary of extreme water-quality conditions in Upper Klamath Lake, Oregon, 2005–19
Spectral mixture analysis for surveillance of harmful algal blooms (SMASH): A field-, laboratory-, and satellite-based approach to identifying cyanobacteria genera from remotely sensed data
Monitoring wetland water quality related to livestock grazing in amphibian habitats
Benthic vertical hydraulic gradients in Upper Klamath Lake, Oregon, 2017
Modeling a 2- and 4-foot drawdown in the Link River to Keno Dam reach of the upper Klamath River, south-central Oregon
Evaluation of hydrologic impact of an irrigation curtailment program in the Upper Klamath Lake Basin using Landsat satellite data
Using the precipitation-runoff modeling system to predict seasonal water availability in the upper Klamath River basin, Oregon and California
Refining the Baseline Sediment Budget for the Klamath River, California
Four dams in the Klamath River Hydroelectric Project (KHP) in Oregon and California (Figure 1) are currently scheduled to be removed over a period of a few weeks or months, beginning in January 2021. The Klamath dam removal will be the largest in the world by almost all measures, and is an unprecedented opportunity to advance science of river responses to such events. The KHP contains approximatel
Annual variations in microcystin occurrence in Upper Klamath Lake, Oregon, based on high-throughput DNA sequencing, qPCR, and environmental parameters
Modeling hydrodynamics, water temperature, and water quality in Klamath Straits Drain, Oregon and California, 2012–15
Klamath River Basin water-quality data
A metabolism-based whole lake eutrophication model to estimate the magnitude and time scales of the effects of restoration in Upper Klamath Lake, south-central Oregon
Below are web tools to help you explore data in the Klamath Basin.
USGS Data Grapher
This is a data graphing utility that allows the user to build graphs of data from selected USGS stations. Select the station, the type of graph, the parameter(s) to plot, and the starting and ending dates for the graph.
Below are news stories associated with the Klamath Basin.
A Warming Climate Could Alter the Ecology of the Deepest Lake in the United States
Warming air temperature is predicted to change water temperature and water column mixing in Oregon’s Crater Lake over the next several decades, potentially impacting the clarity and health of the iconic lake, according to a U.S. Geological Survey report released today.
Below are partners that work with USGS in the Klamath Basin.
- Overview
In 1992, the USGS began studying possible causes for the change in trophic status of Upper Klamath Lake. Since then research has expanded to include groundwater, geomorphology, streamflow forecasting, and fish ecology.
Upper Klamath Lake is a large, shallow lake in southern Oregon that feeds the Klamath River, which flows through California into the Pacific Ocean. The lake is naturally rich in nutrients (i.e., eutrophic), but has become hypereutrophic during the 20th century. Nutrient levels have been high enough to cause annual, extensive blue-green algae blooms each summer since the 1930's. Generally, a eutrophic lake can support diverse plant and animal communities.
Water-quality problems that coincide with the blooms and subsequent decay of dead algae include foul odors, increased acidity, dissolved oxygen concentrations that fluctuate from supersaturation to depletion, elevated ammonia concentrations, and occasionally extensive fish kills. The degraded water quality is a contributing factor in the decline in populations of the shortnose sucker, Chasmistes brevirostris, and the Lost River sucker, Deltistes luxatus, both listed as Federally Endangered Species.
Research by USGS and others continues to monitor and assess conditions in Upper Klamath Lake and the surrounding watershed.
- Science
Below are science projects associated with the Klamath Basin.
Klamath Dam Removal Studies
Following the removal of four dams along the Klamath River, more naturally dynamic flow conditions may result in novel water quality, sediment transport, and geomorphic conditions leading to temporary or longer-term ecological impacts. USGS continuous and discrete monitoring data on aspects related to sediment and geomorphic conditions will be integral to post-dam removal assessments and...Vertical Hydraulic Gradient at the Sediment-Water Interface in Upper Klamath Lake
"The goal of this project is to characterize the vertical hydraulic gradient at the sediment-water interface in Upper Klamath Lake."Upper Klamath River Basin Forecasts
"Determining water availability in the Upper Klamath Basin has always had a degree of uncertainty as a result of the complex hydrology and geology in the region and limited streamflow data."Sediment Fingerprinting in the Upper Klamath Basin
Sediment fingerprinting has been used successfully to identify land uses that are the major sources of sediment. This study will apply these techniques in a predominantly rural, volcanic landscape.Upper Klamath Basin Groundwater Studies
Since the late 1990s the USGS has worked to characterize the regional groundwater hydrology of the upper Klamath Basin. Research focuses on collecting data to help evaluate the state of the groundwater system and its response to external stresses, and to develop computer models to provide insights useful for water management. These efforts build on earlier USGS studies in the basin going back to...Wood River Shoreline Management Tool
The Shoreline Management Tool is a geographic information system (GIS) based program developed to assist water- and land-resource managers in assessing the benefits and effects of changes in surface-water stage on water depth, inundated area, and water volume. Additionally, the Shoreline Management Tool can be used to identify aquatic or terrestrial habitat areas where conditions may be suitable...Water Quality in Keno Reach of the Klamath River
The U.S. Geological Survey, U.S. Bureau of Reclamation, and Watercourse Engineering, Inc. are collaborating to develop knowledge and tools to better manage water quality in the Link-Keno reach of the Klamath River and the Lost River.Future Water Clarity and Dissolved Oxygen in Crater Lake
Warming air temperature may change water temperature and water column mixing in Oregon’s Crater Lake over the next several decades, potentially impacting the clarity and health of the iconic lake.Geomorphology of the Sprague River Basin
The USGS documents historical and current channel and floodplain processes and conditions to assist management and regulatory agencies in evaluating restoration proposals and designing effective restoration and monitoring strategies for the Sprague River and its principle tributaries. The study involves multiple analyses, including assessments of historical channel change, riparian and floodplain...Nutrient and Sediment Loading to Upper Klamath Lake
The USGS employs state-of-the-science techniques to estimate nutrient and suspended-sediment loads to Upper Klamath Lake.Nutrient Loading to Lost River and Klamath River Subbasins
The USGS has characterized nutrient concentrations in the Klamath River and Lost River drainages over multiple years, identified spatial and temporal patterns in nutrient and organic carbon concentrations, and quantified surface water nutrient loads entering and exiting the Klamath Project. - Data
Below are data releases from the Klamath Basin.
USGS Klamath River Basin Water-Quality Mapper
This map interface represents continuous and discrete water-quality data collected by Bureau of Reclamation and USGS at Klamath Basin sites. The USGS and Reclamation data stored in NWIS are accessible using existing tools such as NWIS-Web and the USGS Data Grapher system.
Klamath Marsh January Through June Maximum Surface Water Extent, 1985-2021
The U.S. Geological Survey Oregon Water Science Center, in cooperation with The Klamath Tribes initiated a project to understand changes in surface-water prevalence of Klamath Marsh, Oregon and changes in groundwater levels within and surrounding the marsh. The initial phase of the study focused on developing datasets needed for future interpretive phases of the investigation. This data release doKlamath Marsh January Through May Maximum Surface Water Extent, 1985-2021 (ver. 2.0, March 2022)
The U.S. Geological Survey Oregon Water Science Center, in cooperation with The Klamath Tribes initiated a project to understand changes in the surface-water extent of Klamath Marsh, Oregon and changes in groundwater levels within and surrounding the marsh. The initial phase of the study focused on developing datasets needed for future interpretive phases of the investigation. This data release doPhytoplankton and Zooplankton Data for Upper Klamath Lake, Oregon, 2020
This U.S. Geological Survey (USGS) Data Release provides phytoplankton data from Upper Klamath Lake, OR from 5/11/2020 - 9/30/2020 from ten sites and zooplankton data from Upper Klamath Lake, OR from 5/11/2020 - 10/14/2020 from eight sites. Phytoplankton data are reported to the lowest possible taxonomic level and biovolume, biomass, and density are reported. Zooplankton data are reported to the lPhytoplankton Data for Upper Klamath River, Oregon 2016 - 2020
This U.S. Geological Survey (USGS) Data Release provides phytoplankton data from Upper Klamath River, OR from 8/4/2016 - 9/10/2020 at USGS Station 11509370, Upper Klamath River abv. Keno Dam at Keno, OR. Phytoplankton data are reported to the lowest possible taxonomic level and biovolume, biomass, and density are reported.Depth-to-water data and calculated vertical hydraulic gradient at the sediment-water interface in Upper Klamath Lake, Oregon, 2017
Ten groundwater piezometers and lake-level stilling wells were deployed in Upper Klamath Lake (UKL), Oregon during May through October 2017. Piezometers and stilling wells were deployed in pairs so that water levels could be measured relative to a common measuring point (MP) at each location. Piezometers were installed in the lakebed sediment, with screens from 3.92 to 4.92 feet below the sedimentPhytoplankton and Zooplankton Data for Upper Klamath Lake and River, Oregon, 2019
This U.S. Geological Survey (USGS) Data Release provides phytoplankton data from Upper Klamath Lake, OR and Upper Klamath River, OR from 4/29 - 10/15/2019 from eight sites and zooplankton data from Upper Klamath Lake, OR from 4/16 - 10/15/2019 from three sites. Phytoplankton data are reported to the lowest possible taxonomic level and biovolume, biomass, and density are reported. Zooplankton dataNational Water Information System (NWIS) - Oregon
National Water Information System: Mapper (Oregon)
Data from an Analysis of Dissolved Organic Matter in the Upper Klamath River, Lost River, and Klamath Straits Drain, Oregon and California, 201316
Concentrations of particulate organic carbon (POC) and dissolved organic carbon (DOC), which together comprise total organic carbon, were measured in a reconnaissance study at sampling sites in the Upper Klamath River, Lost River, and Klamath Straits Drain in 201316. In addition, data for total nitrogen and chlorophyll a were collected. Optical absorbance and fluorescence properties of dissolved oUsing High-Throughput DNA Sequencing, Genetic Fingerprinting, and Quantitative PCR as Tools for Monitoring Bloom-Forming and Toxigenic Cyanobacteria in Upper Klamath Lake, Oregon, 2013 and 2014
Monitoring the community structure and metabolic activities of cyanobacterial blooms in Upper Klamath Lake, Oregon, is critical to lake management because these blooms degrade water quality and produce toxic microcystins that are harmful to humans, domestic animals, and wildlife. Genetic tools, such as DNA fingerprinting by terminal restriction fragment length polymorphism (T-RFLP) analysis, high-Upper Klamath and Agency Lakes May/June 1996 bathymetric mapping project
Bathymetric data were collected over all boatable areas of Upper Klamath and Agency Lakes, located in South-Central Oregon, in May and June of 1996. Areas that were too shallow (less than 1.2m) and/or covered with aquatic vegetation were not mapped. A 21ft tunnel-hull boat was fitted with an adjustable transducer mount on the stern. The transducer was mounted on the starboard side of the prop to mOregon Streamflow Data by Basin
View real-time streamflow data in Oregon river basins.
Klamath River Water-Quality Sites
Klamath River water-quality monitoring -- Keno Reach monitors
- Multimedia
- Publications
Below are publications associated with the Klamath Basin.
Filter Total Items: 45Summary of extreme water-quality conditions in Upper Klamath Lake, Oregon, 2005–19
This study used the complete set of continuous water-quality (WQ) data and discrete measurements of total ammonia collected by the U.S. Geological Survey from 2005 to 2019 at the four core sites in Upper Klamath Lake, Oregon, to examine relations between variables and extreme conditions that may be harmful for endemic Lost River suckers (Deltistes luxatus) and shortnose suckers (Chasmistes breviroAuthorsSusan A. WherrySpectral mixture analysis for surveillance of harmful algal blooms (SMASH): A field-, laboratory-, and satellite-based approach to identifying cyanobacteria genera from remotely sensed data
Algal blooms around the world are increasing in frequency and severity, often with the possibility of adverse effects on human and ecosystem health. The health and economic impacts associated with harmful algal blooms, or HABs, provide compelling rationale for developing new methods for monitoring these events via remote sensing. Although concentrations of chlorophyll-a and key pigments like phycoAuthorsCarl J. Legleiter, Tyler Victor King, Kurt D. Carpenter, Natalie Celeste Hall, Adam Mumford, E. Terrence Slonecker, Jennifer L. Graham, Victoria G. Stengel, Nancy Simon, Barry H. RosenMonitoring wetland water quality related to livestock grazing in amphibian habitats
Land use alteration such as livestock grazing can affect water quality in habitats of at-risk wildlife species. Data from managed wetlands are needed to understand levels of exposure for aquatic life stages and monitor grazing-related changes afield. We quantified spatial and temporal variation in water quality in wetlands occupied by threatened Oregon spotted frog (Rana pretiosa) at Klamath MarshAuthorsKelly Smalling, Jennifer Rowe, Christopher Pearl, Luke R. Iwanowicz, Carrie E. Givens, Chauncey W. Anderson, Brome McCreary, Michael J. AdamsBenthic vertical hydraulic gradients in Upper Klamath Lake, Oregon, 2017
Groundwater piezometers and lake stilling wells were deployed as paired sets at 10 locations in Upper Klamath Lake in south-central Oregon from May to October 2017 to measure hydraulic heads in and beneath the lake. Continuous water-level data from piezometers and stilling wells were then used to calculate the vertical hydraulic gradient (VHG) across the sediment-water interface to determine the dAuthorsNicholas Corson-DoschModeling a 2- and 4-foot drawdown in the Link River to Keno Dam reach of the upper Klamath River, south-central Oregon
Executive SummaryThe most upstream, pooled reach of the Klamath River in south-central Oregon, from Link River mouth to Keno Dam (Link-Keno), has a water-surface elevation that remains relatively constant throughout the year. Two model scenarios, using an existing two-dimensional hydrodynamic and water-quality model (CE-QUAL-W2), were constructed to examine the effects of lowering the water-surfacAuthorsAnnett B. Sullivan, Stewart A. RoundsEvaluation of hydrologic impact of an irrigation curtailment program in the Upper Klamath Lake Basin using Landsat satellite data
Upper Klamath Lake (UKL) is the source of the Klamath river that flows through southern Oregon and northern California. The UKL basin is home to two endangered species and provides water for 81,000+ ha (200,000+ acres) of irrigation on the United States Bureau of Reclamation (USBR) Klamath Project located downstream of the UKL basin. Irrigated agriculture also occurs along the tributaries to UKL.AuthorsNaga Manohar Velpuri, Gabriel Senay, Matthew Schauer, C. Amanda Garcia, Ramesh Singh, MacKenzie Friedrichs, Stefanie Bohms, Jonathan V. Haynes, Terrence D. ConlonUsing the precipitation-runoff modeling system to predict seasonal water availability in the upper Klamath River basin, Oregon and California
Accurate forecasts of the streamflow expected during late spring and summer in the Upper Klamath River Basin in southern-central Oregon and northern California are used by water management agencies to balance water allocations for agriculture, aquatic habitat, and hydropower-production needs. Streamflow forecasts are also used by irrigation farmers for planning. The forecasts are typically made twAuthorsJohn C. RisleyRefining the Baseline Sediment Budget for the Klamath River, California
Four dams in the Klamath River Hydroelectric Project (KHP) in Oregon and California (Figure 1) are currently scheduled to be removed over a period of a few weeks or months, beginning in January 2021. The Klamath dam removal will be the largest in the world by almost all measures, and is an unprecedented opportunity to advance science of river responses to such events. The KHP contains approximatel
AuthorsChauncey W. Anderson, Scott A. Wright, Liam N. Schenk, Katherine Skalak, Jennifer A. Curtis, Amy E. East, Adam BenthemAnnual variations in microcystin occurrence in Upper Klamath Lake, Oregon, based on high-throughput DNA sequencing, qPCR, and environmental parameters
Cyanobacteria-dominated blooms in Upper Klamath Lake, Oregon, create poor water quality and produce microcystins that may be detrimental to local wildlife and human health. Genetic tools, including high-throughput DNA sequencing and quantitative polymerase chain reaction (qPCR), have been shown to improve the identification and quantification of key groups associated with these blooms over more trAuthorsSara L. Caldwell Eldridge, Tamara M. WoodModeling hydrodynamics, water temperature, and water quality in Klamath Straits Drain, Oregon and California, 2012–15
Executive SummaryLocated southwest of Klamath Falls, Oregon, Klamath Straits Drain is a 10.1-mile-long canal that conveys water uphill and northward through the use of pumps before discharging to the Klamath River. Klamath Straits Drain traverses an area that historically encompassed Lower Klamath Lake. Currently, the Drain receives water from farmland and from parts of the Lower Klamath Lake NatiAuthorsAnnett B. Sullivan, Stewart A. RoundsKlamath River Basin water-quality data
The Klamath River Basin stretches from the mountains and inland basins of south-central Oregon and northern California to the Pacific Ocean, spanning multiple climatic regions and encompassing a variety of ecosystems. Water quantity and water quality are important topics in the basin, because water is a critical resource for farming and municipal use, power generation, and for the support of wildlAuthorsCassandra D. Smith, Stewart A. Rounds, Leonard L. OrzolA metabolism-based whole lake eutrophication model to estimate the magnitude and time scales of the effects of restoration in Upper Klamath Lake, south-central Oregon
A whole lake eutrophication (WLE) model approach for phosphorus and cyanobacterial biomass in Upper Klamath Lake, south-central Oregon, is presented here. The model is a successor to a previous model developed to inform a Total Maximum Daily Load (TMDL) for phosphorus in the lake, but is based on net primary production (NPP), which can be calculated from dissolved oxygen, rather than scaling up aAuthorsSusan A. Wherry, Tamara M. Wood - Web Tools
Below are web tools to help you explore data in the Klamath Basin.
USGS Data Grapher
This is a data graphing utility that allows the user to build graphs of data from selected USGS stations. Select the station, the type of graph, the parameter(s) to plot, and the starting and ending dates for the graph.
- News
Below are news stories associated with the Klamath Basin.
A Warming Climate Could Alter the Ecology of the Deepest Lake in the United States
Warming air temperature is predicted to change water temperature and water column mixing in Oregon’s Crater Lake over the next several decades, potentially impacting the clarity and health of the iconic lake, according to a U.S. Geological Survey report released today.
- Partners
Below are partners that work with USGS in the Klamath Basin.