Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42729
Prevalence of Ophidiomyces ophidiicola and epizootiology of snake fungal disease in free-ranging Northern Pine Snakes (Pituophis melanoleucus melanoleucus) in New Jersey Prevalence of Ophidiomyces ophidiicola and epizootiology of snake fungal disease in free-ranging Northern Pine Snakes (Pituophis melanoleucus melanoleucus) in New Jersey
Snake fungal disease, caused by Ophidiomyces ophidiicola, is recognized as a potential concern for North American snakes. We tested skin swabs from Northern Pine Snakes (Pituophis melanoleucus melanoleucus) in the New Jersey pinelands for the presence of O. ophidiicola before emergence from hibernation. We used qPCR to test the collected swabs for the presence of O. ophidiicola, then...
Authors
Joanna Burger, Michael Gochfeld, Robert T. Zappalorti, John F. Bunnell, Christian Jeitner, David Schneider, Kelly Ng, Emile DeVito, Jeffrey M. Lorch
Spatiotemporal segregation by migratory phenotype indicates potential for assortative mating in lake sturgeon Spatiotemporal segregation by migratory phenotype indicates potential for assortative mating in lake sturgeon
Migratory diversity can promote population differentiation if sympatric phenotypes become temporally, spatially, or behaviorally segregated during breeding. In this study, the potential for spatiotemporal segregation was tested among three migratory phenotypes of lake sturgeon (Acipenser fulvescens) that spawn in the St. Clair River of North America’s Laurentian Great Lakes but differ in...
Authors
Tyler J. Buchinger, Darryl W. Hondorp, Charles C. Krueger
Plant migration due to winter climate change: Range expansion of tropical invasive plants in response to warming winters Plant migration due to winter climate change: Range expansion of tropical invasive plants in response to warming winters
Warming winters due to climate change can facilitate the range expansion of invasive non-native species. In the southeastern United States, the frequency and intensity of extreme winter temperatures determines the northern range limits of many tropical organisms including many species of invasive non-native plants. However, the effects of winter climate change on invasive species’ range...
Authors
Michael Osland, Bogdan Chivoiu, Laura Feher, Leah Dale, Deah Lieurance, Wesley Daniel, Jessica E. Spencer
Comparison of magnetic bead and rapid swab RNA extraction methods for detecting rabbit hemorrhagic disease virus 2 in rabbit liver samples Comparison of magnetic bead and rapid swab RNA extraction methods for detecting rabbit hemorrhagic disease virus 2 in rabbit liver samples
We compared a bead RNA extraction method with a one-tube method that required only a heat block and ice. RNA was first extracted from liver samples from nine rabbits dying from rabbit hemorrhagic disease virus 2 (RHDV2) using magnetic beads, and RT-PCR was used to detect RHDV2 sequence. Following freezing, RNA was extracted a second time using the SwiftX™ Swabs Viral RNA Extraction...
Authors
Erik K. Hofmeister, Kathryn M. Griffin, Hon S. Ip
Genetic mark–recapture analysis reveals large annual variation in pre-breeding sex ratio of greater sage-grouse Genetic mark–recapture analysis reveals large annual variation in pre-breeding sex ratio of greater sage-grouse
Sex ratio, and the extent to which it varies over time, is an important factor in the demography, management, and conservation of wildlife populations. Greater sage-grouse Centrocercus urophasianus populations in western North America are monitored using counts of males at leks in spring. Population estimates derived from lek-count data typically assume a constant, female-biased sex...
Authors
Jessica E. Shyvers, Brett L Walker, Sara J. Oyler-McCance, Jennifer A. Fike, Barry R. Noon
Linking vocal behaviours to habitat structure to create behavioural landscapes Linking vocal behaviours to habitat structure to create behavioural landscapes
The recent development of animal-borne sensors coupled with location data can provide insights into how individuals modify their behaviour with respect to specific habitat features. Animals can express a diverse array of behaviours as they navigate heterogenous landscapes, yet few studies have specifically evaluated the interaction of behaviours with habitat characteristics. We used a...
Authors
Erin C Netoskie, Kristina L. Paxton, Eben H. Paxton, Gregory P. Asner, Patrick J. Hart
Phenotypic trait differences between Iris pseudacorus in native and introduced ranges support greater capacity of invasive populations to withstand sea level rise Phenotypic trait differences between Iris pseudacorus in native and introduced ranges support greater capacity of invasive populations to withstand sea level rise
Aim Tidal wetlands are greatly impacted by climate change, and by the invasion of alien plant species that are being exposed to salinity changes and longer inundation periods resulting from sea level rise. To explore the capacity for the invasion of Iris pseudacorus to persist with sea level rise, we initiated an intercontinental study along estuarine gradients in the invaded North...
Authors
Brenda J. Grewell, Blanca Gallego-Tevar, Gael Barcenas-Moreno, Christine R. Whitcraft, Karen M. Thorne, Kevin Buffington, Jesus M. Castillo
Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions
Lakes provide important habitat for salmonids that may use them as a primary feeding area between periods of reproduction. The seasonal changes in vertical thermal structure in lakes can affect the distribution of salmonids on seasonal and diel time scales as they search for, consume, and digest prey that also exploits the water column's distribution of food, temperature and light. Our...
Authors
Zachary R. Thomas, David Beauchamp, Casey P. Clark, Thomas P. Quinn
Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2022 Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2022
Since 1978, surveys of Lake Ontario preyfish communities have provided information on the status and trends of the benthic preyfish community related to Fish Community Objectives that includes understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate Canadian sites, increasing the survey’s...
Authors
Brian O’Malley, Scott P. Minihkeim, James McKenna, Jessica A. Goretzke, Jeremy P. Holden
Body size predicts the rate of contemporary morphological change in birds Body size predicts the rate of contemporary morphological change in birds
Across the globe, bird morphology is changing rapidly. Although trajectories of change are frequently consistent across studies, rates of change among species vary in magnitude—a phenomenon that remains unexplained. By analyzing two independently collected datasets demonstrating consistent changes in morphology in 129 species, we show that rates of phenotypic change are negatively...
Authors
Marketa Zimova, Brian Weeks, David E. Willard, Sean T Giery, Vitek Jirinec, Ryan C. Burner, Benjamin M Winger
Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration
Establishing realistic targets for fish community composition is needed to assess the effectiveness of river restoration projects. We used environmental DNA (eDNA) metabarcoding with MiFish primers to obtain estimates of fish community composition across 17 sites upstream, downstream and within a restoration mitigation project area (Kaihotsu–Kasumi) located in the Shigenobu River system...
Authors
Ito, Hiroshi Yamauchi, Miwa Shigeyoshi, Kousuke Ashino, Chie Yonashiro, Maki Asami, Yuko Goto, Jeffrey J. Duda, Hiroki Yamanaka
Reduction of paraoxonase expression followed by inactivation across independent semiaquatic mammals suggests stepwise path to pseudogenization Reduction of paraoxonase expression followed by inactivation across independent semiaquatic mammals suggests stepwise path to pseudogenization
Convergent adaptation to the same environment by multiple lineages frequently involves rapid evolutionary change at the same genes, implicating these genes as important for environmental adaptation. Such adaptive molecular changes may yield either change or loss of protein function; loss of function can eliminate newly deleterious proteins or reduce energy necessary for protein...
Authors
Allie M. Graham, Jerrica M. Jamison, Marisol Bustos, Charlotte Cournoyer, Alexa Michaels, Jason S. Presnell, Rebecca Richter, Daniel E. Crocker, Ari Fustukjian, Margaret Hunter, Lorrie D. Rea, Judit Marsillach, Clement E. Furlong, Wynn K. Meyer, Nathan L. Clark