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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 174960

Ecological thresholds and transformations due to climate change: The role of abiotic stress Ecological thresholds and transformations due to climate change: The role of abiotic stress

An ecological threshold is the point at which a comparatively small environmental change triggers an abrupt and disproportionately large ecological response. In the face of accelerating climate change, there is concern that abrupt ecosystem transformations will become more widespread as critical ecological thresholds are crossed. There has been ongoing debate, however, regarding the...
Authors
Michael Osland, John B. Bradford, Lauren Toth, Matthew J. Germino, James Grace, Judith Z. Drexler, Camille L. Stagg, Eric E. Grossman, Karen M. Thorne, Stephanie Romanach, Davina Passeri, Gregory E. Noe, Jessica R. Lacy, Ken Krauss, Kurt P. Kowalski, Glenn R. Guntenspergen, Neil K. Ganju, Nicholas Enwright, Joel A. Carr, Kristin B. Byrd, Kevin Buffington

River floods under wetter antecedent conditions deliver coarser sediment to the coast River floods under wetter antecedent conditions deliver coarser sediment to the coast

Increasing hydrologic volatility—more extreme rain, and larger variations between wet and dry years—has become apparent in some regions, but few data exist to determine how intensifying hydrologic extremes affect sedimentary systems. Using uniquely high-resolution records of fluvial suspended sediment and coastal morphology, we quantify sedimentary responses from a steep, 357-km2...
Authors
Amy E. East, Alexander G. Snyder, Andrew W. Stevens, Jonathan A. Warrick, David J. Topping, Matthew A. Thomas, Andrew C. Ritchie

Transcriptomics as an early warning of domoic acid exposure in Pacific razor clams (Siliqua patula) Transcriptomics as an early warning of domoic acid exposure in Pacific razor clams (Siliqua patula)

As oceans warm, harmful algal blooms (HABs) are expected to increase, including blooms of Pseudo-nitzschia, a diatom that produces domoic acid (DA), which is a potent neurotoxin. Regulatory limits for human consumption (0.075–0.1 mg/kg/day; acute exposure) exist for the Pacific razor clam; however, fisheries currently do not have regulatory limits for chronic low-level exposure to DA...
Authors
Lizabeth Bowen, Shannon C. Waters-Dynes, Brenda Ballachey, Heather Coletti, Zachary Forster, Ji Li, Bradley Jenner

Multi-Scale Graph Learning for anti-sparse downscaling Multi-Scale Graph Learning for anti-sparse downscaling

Water temperature can vary substantially even across short distances within the same sub-watershed. Accurate prediction of stream water temperature at fine spatial resolutions (i.e., fine scales, ≤ 1 km) enables precise interventions to maintain water quality and protect aquatic habitats. Although spatiotemporal models have made substantial progress in spatially coarse time series...
Authors
Yingda Fan, Runlong Yu, Janet R. Barclay, Alison P. Appling, Yiming Sun, Yiqun Xie, Xiaowei Jia

Detection of Giardia and Cryptosporidium in surface water of a subarctic city Detection of Giardia and Cryptosporidium in surface water of a subarctic city

Giardia and Cryptosporidium spp. are globally distributed protozoan parasites that can cause gastrointestinal disease in humans and animals. These zoonotic parasites and their ecological relationships have been understudied in Alaska and elsewhere, despite being identified as priority zoonotic pathogens. We aimed to detect and characterize Giardia and Cryptosporidium spp. in waterbodies...
Authors
Christina Ahlstrom, Michael P. Carey, Damian M. Menning, Jonathan A. O’Donnell, Andrew M. Ramey

Development of a genotyping-in-thousands by sequencing (GT-seq) panel for identifying individuals and estimating relatedness among Alaska black bears (Ursus americanus) Development of a genotyping-in-thousands by sequencing (GT-seq) panel for identifying individuals and estimating relatedness among Alaska black bears (Ursus americanus)

The management and conservation of large mammals, such as black bears (Ursus americanus), have long been informed by genetic estimates of population size and individual dispersal. Amplicon sequencing methods, also known as ‘genotyping-in-thousands-by sequencing’ (GT-seq), now enable the efficient and cost-effective genotyping of hundreds of loci and individuals in the same sequencing run...
Authors
Eleni Leto Petrou, Colette D. Brandt, Timothy J. Spivey, Kristen M. Gruenthal, Cherie Marie Mckeeman, Sean D. Farley, David Battle, Cory Stantorf, Andrew M. Ramey

Managing for tomorrow—A climate adaptation decision framework Managing for tomorrow—A climate adaptation decision framework

Climate change presents new and compounding challenges to natural resource management. With changing climate patterns, managers are confronted with difficult decisions on how to minimize climate effects on habitats, infrastructure, and wildlife populations. To support climate adaptation decision making, we first conceptualized an approach that integrates the principles of the resist...
Authors
Kristen L. Bouska, Joshua Booker, Susan C. Clark, John Delaney, Josh D. Eash, Max Post van der Burg, Heidi Roop

Benthic habitat map of Olowalu Reef, Maui, Hawaii—Geomorphological structure, biological cover, and geologic zonation determined with spectral, lidar, and acoustic data Benthic habitat map of Olowalu Reef, Maui, Hawaii—Geomorphological structure, biological cover, and geologic zonation determined with spectral, lidar, and acoustic data

The fringing coral reef off Olowalu, Maui, Hawaii, has been identified as a local conservation priority site. In 2007, the National Oceanic and Atmospheric Administration (NOAA) produced a benthic habitat map of the Hawaiian Islands that was used as a foundation for this study. To support place-based management of the reef in the future, the U.S. Geological Survey (USGS) mapped the...
Authors
Liana N. Heberer, Kristen C. Alkins, Curt D. Storlazzi, Susan A. Cochran, Ann E. Gibbs, Russell Sparks, Kristy Stone, Itana Silva, Tatiana Martinez, Cole Peralto, Arielle S. Levine, Douglas A. Stow, Jillian Maloney

Ten quick tips to get you started with Bayesian statistics Ten quick tips to get you started with Bayesian statistics

No abstract available.
Authors
Olivier Gimenez, Andy Royle, Marc Kéry, Chloé Nater

Behavioral responses of Silver Carp to underwater acoustic deterrent sounds Behavioral responses of Silver Carp to underwater acoustic deterrent sounds

Objective Invasive carps continue to spread across the Mississippi River basin, posing significant ecological risk. Identifying technologies to slow their dispersal is critical. The use of sound has been proposed as a method to modify the behavior of Silver Carp Hypophthalmichthys molitrix, offering a nonstructural deterrent strategy.Methods Silver Carp implanted with acoustic...
Authors
Jacob Faulkner, James J. Wamboldt, Katelyn M. Lawson, John Plumb, Christa M. Woodley, Jessica C. Stanton, Matthew D. Sholtis, Nicholas M Swyers, Mark Roth, Aaron C. Urbanczyk, Robin D. Calfee, Marybeth K. Brey

Insect pollinator crossing of international border barriers along the U.S.-Mexico border Insect pollinator crossing of international border barriers along the U.S.-Mexico border

Infrastructure along the U.S.-Mexico Border may not be equally permeable to all types of insect pollinators with potential implications for pollen and gene flow between plant populations. Pollinators were observed on their approach to two types of border barriers (slatted and cemented) along the U.S.-Mexico Border from March 2023 to January 2024. Near the barrier, four insect behaviors...
Authors
Beth Middleton

Identifying preferential flow from soil moisture time series: Review of methodologies Identifying preferential flow from soil moisture time series: Review of methodologies

Identifying and quantifying preferential flow (PF) through soil—the rapid movement of water through spatially-distinct pathways in the subsurface—is vital to understanding how the hydrologic cycle responds to climate, land cover, and anthropogenic changes. In recent decades, methods have been developed that use measured soil moisture time series to identify PF. Because they allow for...
Authors
John R. Nimmo, Inge Wiekenkamp, Ryoko Araki, Jannis Groh, Nitin Singh, Octavia Crompton, Briana Wyatt, Hoori Ajami, Daniel Gimenez, Daniel Hirmas, Pamela Sullivan, Matthias Sprenger
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