Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
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Naegleria fowleri detected in Grand Teton National Park hot springs Naegleria fowleri detected in Grand Teton National Park hot springs
The free-living thermophilic amoeba Naegleria fowleri (N. fowleri) causes the highly fatal disease primary amoebic meningoencephalitis. The environmental conditions that are favorable to the growth and proliferation of N. fowleri are not well-defined, especially in northern regions of the United States. In this study, we used culture-based methods and multiple molecular approaches to...
Authors
Elliott Barnhart, Stacy Kinsey, Peter R. Wright, Sara L. Caldwell Eldridge, Vince Hill, Amy Kahler, Mia Mattioli, Robert S. Cornman, Deborah D. Iwanowicz, Zachary Eddy, Sandra Halonen, Rebecca C. Mueller, Brent Peyton, Geoffrey Puzon
Extreme drought impacts have been underestimated in grasslands and shrublands globally Extreme drought impacts have been underestimated in grasslands and shrublands globally
Drought has well-documented societal and economic consequences. Climate change is expected to intensify drought to even more extreme levels, but because such droughts have been historically rare, their impact on ecosystem functioning is not well known. We experimentally imposed the most frequent type of intensified drought—one that is ~1 y in duration—at 100 grassland and shrubland sites
Authors
Melinda D. Smith, Kate D Wilkins, Martin C. Holdrege, Peter A. Wilfahrt, Scott L. Collins, Alan K. Knapp, Osvaldo E. Sala, Jeffrey S. Dukes, Richard P. Phillips, Laura Yahdjian, Laureano A. Gherardi, Timothy Ohlert, Claus Beier, Lauchlan H. Fraser, Anke Jentsch, Michael E. Loik, Fernando T. Maestre, Sally A. Power, Qiang Yu, Andrew J. Felton, Seth M. Munson, Yiqi Luo, Hamed Abdoli, Mehdi Abedi, Concepcion L. Alados, Juan Alberti, Moshe Alon, Hui An, Brian Anacker, Maggie Anderson, Harald Auge, Seton Bachle, Khadijeh Bahalkeh, Michael Bahn, Amgaa Batbaatar, Taryn Bauerle, Karen H. Beard, Kai Behn, Ilka Beil, Lucio Biancari, Irmgard Blindow, Viviana Florencia Bondaruk, Elizabeth T. Borer, Edward W. Bork, Carlos Martin Bruschetti, Kerry M. Byrne, James F. Cahill Jr., Dianela A. Calvo, Michele Carbognani, Augusto Cardoni, Cameron N. Carlyle, Miguel Castillo-Garcia, Scott X. Chang, Jeff Chieppa, Marcus V. Cianciaruso, Ofer Cohen, Amanda L. Cordeiro, Daniela F. Cusack, Sven Dahlke, Pedro Daleo, Carla M. D'Antonio, Lee H. Dietterich, Tim S. Doherty, Maren Dubbert, Anne Ebling, Nico Eisenhauer, Felicia M. Fischer, T’ai G. W. Forte, Tobias Gebauer, Beatriz Gozalo, Aaron C. Greenville, Karlo G. Guidoni-Martins, Heather J. Hannusch, Siri Vatso Haugum, Yann Hautier, Mariet Hefting, Hugh A. L. Henry, Daniela Hoss, Johannes Ingrisch, Oscar Iribarne, Forest Isbell, Yari Johnson, Samuel E. Jordan, Eugene F. Kelly, Kaitlin Kimmel, Juergen Kreyling, Gyorgy Kroel-Dulay, Alicia Kropfl, Angelika Kubert, Andrew Kulmatiski, Eric G. Lamb, Klaus Steenberg Larsen, Julie Larson, Jason Lawson, Cintia V. Leder, Anja Linstadter, Jielin Liu, Shirong Liu, Alexandra G. Lodge, Grisel Longo, Alejandro Loydi, Junwei Luan, Frederick Curtis Lubbe, Craig Macfarlane, Kathleen Mackie-Haas, Andrey V. Malyshev, Adrian Maturano-Ruiz, Thomas Merchant, Daniel B. Metcalfe, Akira S. Mori, Edwin Mudongo, Gregory S. Newman, Uffe N. Nielsen, Dale Nimmo, Yujie Niu, Paola Nobre, Rory C. O’Connor, Roma Ogaya, Gastón R. Oñatibia, Ildiko Orban, Brooke B. Osborne, Rafael Otfinowski, Meelis Pärtel, Josep Penuelas, Pablo L. Peri, Guadalupe Peter, Alessandro Petraglia, Catherine Picon-Cochard, Valerio D. Pillar, Juan Manuel Pineiro-Guerra, Laura W. Ploughe, Robert M. Plowes, Cristy Portales-Reyes, Suzanne M. Prober, Yolanda Pueyo, Sasha C. Reed, Euan G. Ritchie, Dana Aylen Rodriguez, William E. Rogers, Christiane Roscher, Ana M. Sánchez, Bráulio A. Santos, Maria Cecilia Scarfo, Eric W. Seabloom, Baoku Shu, Lara Souza, Andreas Stampfli, Rachel J. Standish, Marcelo Sternberg, Wei Sun, Marie Sunnemann, Michelle Tedder, Pal Thorvaldsen, Dashuan Tian, Katja Tielborger, Alejandro Valdecantos, Liesbeth van den Brink, Vigdis Vandvik, Mathew R. Vankoughnett, Liv Guri Velle, Changhui Wang, Yi Wang, Glenda M. Wardle, Christiane Werner, Cunzheng Wei, Georg Wiehl, Jennifer L. Williams, Amelia A. Wolf, Michaela Zeiter, Fawei Zhang, Juntao Zhu, Ning Zong, Xiaoan Zuo
Comparing maximum likelihood and Bayesian methods for fitting hidden Markov models to multi-state capture-recapture data of invasive carp in the Illinois River Comparing maximum likelihood and Bayesian methods for fitting hidden Markov models to multi-state capture-recapture data of invasive carp in the Illinois River
Background Hidden Markov Models (HMMs) are often used to model multi-state capture-recapture data in ecology. However, a variety of HMM modeling approaches and software exist, including both maximum likelihood and Bayesian methods. The diversity of these methods obscures the underlying HMM and can exaggerate minor differences in parameterization.Methods In this paper, we describe a...
Authors
Charles J. Labuzzetta, Alison A. Coulter, Richard A. Erickson
Can the planetary health concept save freshwater biodiversity and ecosystems? Can the planetary health concept save freshwater biodiversity and ecosystems?
People clearly need and benefit from healthy freshwater ecosystems; Given the precarious state of these important systems and services, current efforts to address the freshwater biodiversity crisis remain insufficient. Planetary health is an emerging framework that aims to secure the state of natural systems within environmental limits that ensure humanity can flourish. The planetary...
Authors
Steven J. Cooke, Abigail Lynch, David Tickner, Robin Abell, Tatenda Dalu, Kathryn J. Fiorella, Rajeev Raghavan, Ian J. Harrison, Sonja C. Jahnig, Derek Vollmer, Steve Carpenter
Subsurface redox interactions regulate ebullitive methane flux in heterogeneous Mississippi River deltaic wetland Subsurface redox interactions regulate ebullitive methane flux in heterogeneous Mississippi River deltaic wetland
As interfaces connecting terrestrial and ocean ecosystems, coastal wetlands develop temporally and spatially complex redox conditions, which drive uncertainties in greenhouse gas emission as well as the total carbon budget of the coastal ecosystem. To evaluate the role of complex redox reactions in methane emission from coastal wetlands, a coupled reactive-transport model was configured...
Authors
Jiaze Wang, Theresa O’Meara, Sophie LaFond-Hudson, Songjie He, Kanchan Maiti, Eric Ward, Benjamin N. Sulman
Widespread chemical dilution of streams continues as long-term effects of acidic deposition slowly reverse Widespread chemical dilution of streams continues as long-term effects of acidic deposition slowly reverse
Studies of recovery from acidic deposition have focused on reversal of acidification and its associated effects, but as recovery proceeds slowly, chemical dilution of surface waters is emerging as a key factor in the recovery process that has significant chemical and biological implications. This investigation uses long-term chemical records from 130 streams in the Adirondack region of...
Authors
Gregory B. Lawrence, Kevin Alexander Ryan
The US COVID-19 and Influenza Scenario Modeling Hubs: Delivering long-term projections to guide policy The US COVID-19 and Influenza Scenario Modeling Hubs: Delivering long-term projections to guide policy
Between December 2020 and April 2023, the COVID-19 Scenario Modeling Hub (SMH) generated operational multi-month projections of COVID-19 burden in the US to guide pandemic planning and decision-making in the context of high uncertainty. This effort was born out of an attempt to coordinate, synthesize and effectively use the unprecedented amount of predictive modeling that emerged...
Authors
Sara L Loo, Emily Howerton, Lucie Contamin, Claire P. Smith, Rebecca K. Borchering, Luke C Mullany, Samantha Bents, Erica Carcelen, Sung-mok Jung, Tiffany L. Bogich, Willem G. van Panhuis, Jessica Kerr, Jessi Espino, Katie Yan, Harry Hochheiser, Michael C. Runge, Katriona Shea, Justin Lessler, Cécile Viboud, Shaun Truelove
Planning hydrological restoration of coastal wetlands: Key model considerations and solutions Planning hydrological restoration of coastal wetlands: Key model considerations and solutions
The hydrological restoration of coastal wetlands is an emerging approach for mitigating and adapting to climate change and enhancing ecosystem services such as improved water quality and biodiversity. This paper synthesises current knowledge on selecting appropriate modelling approaches for hydrological restoration projects. The selection of a modelling approach is based on project...
Authors
Alice Twomey, Karinna Nunez, Joel A. Carr, Steve Crooks, Daniel A. Friess, William Glamore, Michelle Orr, Ruth Reef, Kerrylee Rogers, Nathan Waltham, Catherine E. Lovelock
Complex landslide patterns explained by local intra-unit variability of stratigraphy and structure: Case study in the Tyee Formation, Oregon, USA Complex landslide patterns explained by local intra-unit variability of stratigraphy and structure: Case study in the Tyee Formation, Oregon, USA
Lithology and geologic structure are important controls on landslide susceptibility and are incorporated into many regional landslide hazard models. Typically, metrics for mapped geologic units are used as model input variables and a single set of values for material strength are assumed, regardless of spatial heterogeneities that may exist within a map unit. Here we describe how...
Authors
Sean Richard LaHusen, Alex R. Grant
Environmental and geographical factors influence the occurrence and abundance of the southern house mosquito, Culex quinquefasciatus, in Hawai‘i Environmental and geographical factors influence the occurrence and abundance of the southern house mosquito, Culex quinquefasciatus, in Hawai‘i
Hawaiian honeycreepers, a group of endemic Hawaiian forest birds, are being threatened by avian malaria, a non-native disease that is driving honeycreepers populations to extinction. Avian malaria is caused by the parasite Plasmodium relictum, which is transmitted by the invasive mosquito Culex quinquefasciatus. Environmental and geographical factors play an important role in shaping...
Authors
Oswaldo Villena, Katherine Maria McClure, Richard J. Camp, Dennis Lapointe, Carter T. Atkinson, Helen Sofaer, Lucas Fortini
The geographic extent of bird populations affected by renewable-energy development The geographic extent of bird populations affected by renewable-energy development
Bird populations are declining globally. Wind and solar energy can reduce emissions of fossil fuels that drive anthropogenic climate change, yet renewable-energy production represents a potential threat to bird species. Surveys to assess potential effects at renewable-energy facilities are exclusively local, and the geographic extent encompassed by birds killed at these facilities is...
Authors
Hannah Vander Zander, David H. Nelson, Tara Conkling, Taber Allison, James E. Diffendorfer, Thomas Dietsch, Amy L Fesnock, Scott Loss, Patricia Ortiz, Robin Paulmann, Krysta Rodgers, Peter M. Sanzenbacher, Todd E. Katzner
Limitations of invasive snake control tools in the context of a new invasion on an island with abundant prey Limitations of invasive snake control tools in the context of a new invasion on an island with abundant prey
In October 2020, a new population of invasive brown treesnakes (Boiga irregularis) was discovered on the 33-ha Cocos Island, 2.5 km off the south coast of Guam. Cocos Island is a unique conservation resource, providing refuge for many lizards and birds, including endangered species, which were extirpated from mainland Guam by invasive predators including brown treesnakes. We sought to...
Authors
Shane R. Siers, Melia Gail Nafus, Jaried E. Calaor, Rachel M. Volsteadt, Matthew S. Grassi, Megan Volsteadt, Aaron F. Collins, Patrick D Barnhart, Logan Tanner Huse, Amy A. Yackel Adams, Diane L. Vice