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Publications

This list of Water Resources Mission Area publications includes both official USGS publications and journal articles authored by our scientists. A searchable database of all USGS publications can be accessed at the USGS Publications Warehouse.

Filter Total Items: 19048

Using fish community and population indicators to assess the biological condition of streams and rivers of the Chesapeake Bay watershed, USA Using fish community and population indicators to assess the biological condition of streams and rivers of the Chesapeake Bay watershed, USA

The development of indicators to assess relative freshwater condition is critical for management and conservation. Predictive modeling can enhance the utility of indicators by providing estimates of condition for unsurveyed locations. Such approaches grant understanding of where “good” and “poor” conditions occur and provide insight into landscape contexts supporting such conditions...
Authors
Kelly O. Maloney, Kevin P. Krause, Matthew J. Cashman, Wesley M. Daniel, Benjamin P. Gressler, Daniel J. Wieferich, John A. Young

Integrated science for the study of perfluoroalkyl and polyfluoroalkyl substances (PFAS) in the environment—A strategic science vision for the U.S. Geological Survey Integrated science for the study of perfluoroalkyl and polyfluoroalkyl substances (PFAS) in the environment—A strategic science vision for the U.S. Geological Survey

Concerns related to perfluoroalkyl and polyfluoroalkyl substances (PFAS) in sources of drinking water and in natural and engineered environments have captured national attention over the last few decades. This report provides an overview of the science gaps that exist in the fields of study related to PFAS that are relevant to the U.S. Geological Survey mission and identifies...
Authors
Andrea K. Tokranov, Paul M. Bradley, Michael J. Focazio, Douglas B. Kent, Denis R. LeBlanc, Jeff W. McCoy, Kelly L. Smalling, Jeffery A. Steevens, Patricia L. Toccalino

A scalable model-independent iterative data assimilation tool for sequential and batch estimation of high dimensional model parameters and states A scalable model-independent iterative data assimilation tool for sequential and batch estimation of high dimensional model parameters and states

Ensemble-based data assimilation (DA) methods have displayed strong potential to improve model state and parameter estimation across several disciplines due to their computational efficiency, scalability, and ability to estimate uncertainty in the dynamic states and the parameters. However, a barrier to adoption of ensemble DA methods remains. Namely, there is currently a lack of...
Authors
Ayman H. Alzraiee, Jeremy T. White, Matthew Knowling, Randall J. Hunt, Michael N. Fienen

The MODFLOW Application Programming Interface for simulationcontrol and software interoperability The MODFLOW Application Programming Interface for simulationcontrol and software interoperability

The MODFLOW API allows other programs to control MODFLOW and interactively change variables without having to modify the source code. The MODFLOW API is based on the Basic Model Interface (BMI), which is a set of conventions that define how to initialize a simulation, update the model state by advancing in time, and finalize the run. For many existing MODFLOW coupling applications, the...
Authors
Joseph D. Hughes, Martijn J. Russcher, Christian D. Langevin, Eric D. Morway, Richard R. McDonald

A review of algal toxin exposures on reserved federal lands and among trust species in the United States A review of algal toxin exposures on reserved federal lands and among trust species in the United States

Associated health effects from algal toxin exposure are a growing concern for human and animal health. Algal toxin poisonings may occur from contact with or consumption of water supplies or from ingestion of contaminated animals. The U.S. Federal Government owns or holds in trust about 259 million hectares of land, in addition to the Trust species obligations. We completed the first...
Authors
Zachary R. Laughrey, Victoria Christensen, Robert J. Dusek, Sarena Senegal, Julia S. Lankton, Tracy Ziegler, Lee C. Jones, Daniel K. Jones, Brianna M. Williams, Stephanie E. Gordon, Gerald A. Clyde, Erich B Emery, Keith A. Loftin

Juvenile African clawed frogs (Xenopus laevis) express growth, metamorphosis, mortality, gene expression, and metabolic changes when exposed to thiamethoxam and clothianidin Juvenile African clawed frogs (Xenopus laevis) express growth, metamorphosis, mortality, gene expression, and metabolic changes when exposed to thiamethoxam and clothianidin

Neonicotinoids (NEO) represent the main class of insecticides currently in use, with thiamethoxam (THX) and clothianidin (CLO) primarily applied agriculturally. With few comprehensive studies having been performed with non-target amphibians, the aim was to investigate potential biomarker responses along an adverse outcome pathway of NEO exposure, whereby data were collected on multiple...
Authors
Jill Jenkins, Katherine R. Hartop, Ghadeer Bukhari, Debra E. Howton, Kelly L. Smalling, Scott Mize, Michelle L. Hladik, Darren Johnson, Rassa Dale, Bonnie L. Brown

Subsurface temperature properties for three types of permeable pavements in cold weather climates and implications for deicer reduction Subsurface temperature properties for three types of permeable pavements in cold weather climates and implications for deicer reduction

Permeable pavement has been shown to be an effective urban stormwater management tool although much is still unknown about freeze-thaw responses and the implications for deicer reduction in cold weather climates. Temperature data from the subsurface of three permeable pavement types—interlocking concrete pavers (PICP), concrete (PC), and asphalt (PA)—were collected over a seven-year...
Authors
Mari Danz, Nicolas Buer, William R. Selbig

Historical and paleoflood analyses for probabilistic flood-hazard assessments—Approaches and review guidelines Historical and paleoflood analyses for probabilistic flood-hazard assessments—Approaches and review guidelines

Paleoflood studies are an effective means of providing specific information on the recurrence and magnitude of rare and large floods. Such information can be combined with systematic flood measurements to better assess the frequency of large floods. Paleoflood data also provide valuable information about the linkages among climate, land use, flood-hazard assessments, and channel...
Authors
Tessa M. Harden, Karen R. Ryberg, Jim E. O'Connor, Jonathan M. Friedman, Julie E. Kiang

Capacity of two Sierra Nevada rivers for reintroduction of anadromous salmonids: Insights from a high-resolution view Capacity of two Sierra Nevada rivers for reintroduction of anadromous salmonids: Insights from a high-resolution view

Historically, anadromous steelhead Oncorhynchus mykiss and spring-run Chinook Salmon O. tshawytscha used high-elevation rivers in the Sierra Nevada of California but were extirpated in the 20th century by construction of impassable dams. Plans to reintroduce the fish by opening migratory passage across the dams and reservoirs can only succeed if upstream habitats have the capacity to...
Authors
David A. Boughton, Lee R. Harrison, Sara N. John, Rosealea M. Bond, Colin L. Nicol, Carl J. Legleiter, Ryan T. Richardson

Historical changes in bed elevation and water depth within the Nehalem Bay, Oregon, 1891–2019 Historical changes in bed elevation and water depth within the Nehalem Bay, Oregon, 1891–2019

Estuaries, at the nexus of rivers and the ocean, are depositional areas that respond to changes in streamflow, tides, sea level, and inputs of sediment from marine and watershed sources. Understanding changes in bed elevations, deposited and eroded sediment, and water depth throughout estuaries is relevant for understanding their present-day status and long-term evolution, identifying...
Authors
Mackenzie K. Keith, Krista L. Jones, Gabriel W. Gordon

Climate extremes as drivers of surface-water-quality trends in the United States Climate extremes as drivers of surface-water-quality trends in the United States

Surface-water quality can change in response to climate perturbations, such as changes in the frequency of heavy precipitation or droughts, through direct effects, such as dilution and concentration, and through physical processes, such as bank scour. Water quality might also change through indirect mechanisms, such as changing water demand or changes in runoff interaction with organic...
Authors
Karen R. Ryberg, Jeffrey G. Chanat
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