Corals reefs support marine biodiversity, protect coastlines from storm surges and strong waves, and provide income from tourism to coastal communities. Coral diseases were first recognized in the 1970s and are now considered a major threat to coral reef survival worldwide. Stony coral tissue loss disease (SCTLD) emerged in Florida in 2014 and now impacts nearly 90% of coral reefs in Florida. This new disease causes high mortality rates in some species and has spread into the Caribbean, threatening coral reefs that are already struggling due to other causes.
USGS scientists are working to determine the cause of SCTLD and understand the drivers of this multi-year outbreak. We employ cutting edge genomic technology to characterize the bacterial community differences between healthy and diseased corals. USGS brings specialized expertise in marine veterinary medicine, coral histopathology, coral microbial ecology, and epidemiology of disease outbreaks. USGS is working with regional and national partners and stakeholders to provide decision analysis tools to help manage impacts of coral disease.
Coral Disease Research
Research in response to Florida’s emerging coral disease
USGS Role in DEEP SEARCH: Deep Sea Exploration to Advance Research on Coral, Canyon, and Cold-seep Habitats
Marine Invertebrate Diseases
Coral Bleaching and Disease: Effects on Threatened Corals and Reefs
NRDA: Deepwater ROV Sampling to Assess Potential Impacts to Hardbottom Coral Communities and Associates from the Deepwater Horizon Oil Spill
USGS DISCOVRE: Benthic Ecology, Trophodynamics, and Ecosystem Connectivity – Lophelia II: Continuing Ecological Research on Deep-Sea Corals and Deep Reef Habitats in the Gulf of Mexico
Connectivity of Tropical Marine Ecosystems: Understanding Biodiversity and Trophic Relationships in the Virgin Islands and Puerto Rico
Life on the Edge: Can Corals in Mangroves Provide Insights into Climate Change and Recovery following Severe Hurricane Damage?
Explore our science using the data below.
Underwater temperature on off-shore coral reefs of the Florida Keys, U.S.A.
Bacterial Communities Shed by Montastraea cavernosa Coral Fragments into Filtered Seawater Mesocosms-Raw Data
Viral-like particles are associated with endosymbiont pathology in Florida corals affected by stony coral tissue loss disease
Southeast Florida and Florida Keys: Antibiotic Resistance in Association with Ocean Outfalls and the Antibiotic Treatment of Diseased Corals
Recent publications (2020-2022) related to USGS coral disease research are listed below. A complete listing of USGS coral disease publications is available from the button below.
Advances in coral immunity ‘omics in response to disease outbreaks
Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases
Assessing effects of sediment delivery to coral reefs: A Caribbean watershed perspective
Transforming Palmyra Atoll to native-tree dominance will increase net carbon storage and reduce dissolved organic carbon reef runoff
Viral-like particles are associated with endosymbiont pathology in Florida corals affected by stony coral tissue loss disease
Similarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease
Similarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease
Disease of coral and coral reef fishes
A comparative baseline of coral disease in three regions along the Saudi Arabian coast of the central Red Sea
Global tropical reef fish richness could decline by around half if corals are lost
Identifying metabolic alterations associated with coral growth anomalies using 1H NMR metabolomics
Stony coral tissue loss disease in Florida is associated with disruption of host–zooxanthellae physiology
- Overview
Corals reefs support marine biodiversity, protect coastlines from storm surges and strong waves, and provide income from tourism to coastal communities. Coral diseases were first recognized in the 1970s and are now considered a major threat to coral reef survival worldwide. Stony coral tissue loss disease (SCTLD) emerged in Florida in 2014 and now impacts nearly 90% of coral reefs in Florida. This new disease causes high mortality rates in some species and has spread into the Caribbean, threatening coral reefs that are already struggling due to other causes.
USGS scientists are working to determine the cause of SCTLD and understand the drivers of this multi-year outbreak. We employ cutting edge genomic technology to characterize the bacterial community differences between healthy and diseased corals. USGS brings specialized expertise in marine veterinary medicine, coral histopathology, coral microbial ecology, and epidemiology of disease outbreaks. USGS is working with regional and national partners and stakeholders to provide decision analysis tools to help manage impacts of coral disease.
Coral Disease ResearchResearch in response to Florida’s emerging coral disease
Coral reefs are both ecologically and economically important, serving as nurseries for fisheries, protecting the coastline from storm surges, and generating income from tourism. Since 2014, a wide variety of corals have been dying from unexplained causes throughout South Florida with mortalities ranging from North Miami to the Florida Keys.USGS Role in DEEP SEARCH: Deep Sea Exploration to Advance Research on Coral, Canyon, and Cold-seep Habitats
USGS scientists are collaborating with multiple agencies to provide the esssential foundation for understanding these deep-sea environments.Marine Invertebrate Diseases
Coral reefs worldwide are under tremendous stress primarily due to human activities along the coasts. While climate change, over fishing, and coastal development have been implicated as a major cause of coral reef decline, diseases seem to play an increasing role.Coral Bleaching and Disease: Effects on Threatened Corals and Reefs
A severe disease - tentatively named stony coral tissue loss disease - is rapidly killing corals in the U.S. Virgin Islands. Scientists from the U.S. Geological Survey, the University of Puerto Rico, and the National Park Service are working together to better under the disease and determine if the disease affecting corals in the USVI is the same one that has been killing corals in Florida since...NRDA: Deepwater ROV Sampling to Assess Potential Impacts to Hardbottom Coral Communities and Associates from the Deepwater Horizon Oil Spill
The MC252 oil spill introduced hydrocarbons, dispersants, and drilling muds into the Gulf of Mexico, potentially adversely affecting the seafloor environment surrounding the spill site.USGS DISCOVRE: Benthic Ecology, Trophodynamics, and Ecosystem Connectivity – Lophelia II: Continuing Ecological Research on Deep-Sea Corals and Deep Reef Habitats in the Gulf of Mexico
Deep-sea coral habitats are complex ecosystems at the landscape and local level. While these systems may harbor substantial levels of biodiversity, they remain inadequately investigated.Connectivity of Tropical Marine Ecosystems: Understanding Biodiversity and Trophic Relationships in the Virgin Islands and Puerto Rico
Marine reserves and protected areas in the U.S. Virgin Islands and Puerto Rico encompass a variety of tropical ecosystems, including coral reefs, mangroves, and seagrass beds, but questions remain regarding how effective these areas are at preserving and protecting the habitats and species they encompass. USGS and collaborators address this question by examining the biodiversity and food web...Life on the Edge: Can Corals in Mangroves Provide Insights into Climate Change and Recovery following Severe Hurricane Damage?
WARC is collaborating with USGS scientists from the St. Petersburg Coastal and Marine Science Center and other scientists outside USGS to better understand the role of Hurricane Hole as a refuge from changing climate and ocean acidification. - Data
Explore our science using the data below.
Underwater temperature on off-shore coral reefs of the Florida Keys, U.S.A.
The USGS Coral Reef Ecosystems Studies project provides science that helps resource managers tasked with the stewardship of coral reef resources. Coral reef organisms are very sensitive to high and low water-temperature extremes. It is critical to precisely know water temperatures experienced by corals and associated plants and animals that live in the dynamic, nearshore environment to document thBacterial Communities Shed by Montastraea cavernosa Coral Fragments into Filtered Seawater Mesocosms-Raw Data
The files in this data release contain an amplicon sequence variant (ASV) table and the raw 16S rRNA gene amplicon files from six 0.22-micron size fractions of tangential flow filtration-concentrated microbial communities (Mcav17, Mcav18, McH-101, McH-103, McD-57, and McD-58) derived from mesocosms consisting of filtered seawater in which either healthy or diseased fragments of Montastraea cavernoViral-like particles are associated with endosymbiont pathology in Florida corals affected by stony coral tissue loss disease
Stony coral tissue loss disease (SCTLD) was first documented in 2014 near the Port of Miami, Florida, and has since spread north and south along Florida's Coral Reef, killing large numbers of more than 20 species of coral and leading to the functional extinction of at least one species, Dendrogyra cylindrus. SCTLD is assumed to be caused by bacteria based on presence of different molecular assemblSoutheast Florida and Florida Keys: Antibiotic Resistance in Association with Ocean Outfalls and the Antibiotic Treatment of Diseased Corals
The purpose of these datasets was to define which samples contained antibiotic resistance genes (screened antibiotic resistance gene targets) and the number of detectable targets per sample (sediment, coral mucus and water). These data were determined from samples collected in Southeast Florida and the Florida Keys, in support of the Southeast Florida Coral Reef Initiative. - Publications
Recent publications (2020-2022) related to USGS coral disease research are listed below. A complete listing of USGS coral disease publications is available from the button below.
Filter Total Items: 17Advances in coral immunity ‘omics in response to disease outbreaks
Coral disease has progressively become one of the most pressing issues affecting coral reef survival. In the last 50 years, several reefs throughout the Caribbean have been severely impacted by increased frequency and intensity of disease outbreaks leading to coral death. A recent example of this is stony coral tissue loss disease which has quickly spread throughout the Caribbean, devastating coraAuthorsNikki Traylor-Knowles, Andrew C. Baker, Kelsey M. Beavers, Neha Garg, Jeffrey R. Guyon, Aine Marie Alice Campbell Hawthorn, Nicholas J. MacKnight, Mónica Medina, Laura D. Mydlarz, Esther C. Peters, Julia Marie Stewart, Michael S. Studivan, Joshua D. VossCombining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases
The causative agents of most coral diseases today remain unknown, complicating disease response and restoration efforts. Pathogen identifications can be hampered by complex microbial communities naturally associated with corals and seawater, which create complicating “background noise” that can potentially obscure a pathogen’s signal. Here, we outline an approach to investigate waterborne coral diAuthorsJames S. Evans, Valerie J. Paul, Blake Ushijima, Christina A. KelloggAssessing effects of sediment delivery to coral reefs: A Caribbean watershed perspective
Coral reefs in the western Atlantic and Caribbean are deteriorating primarily from disease outbreaks, increasing seawater temperatures, and stress due to land-based sources of pollutants including sediments associated with land use and dredging. Sediments affect corals in numerous ways including smothering, abrasion, shading, and inhibition of coral recruitment. Sediment delivery resulting in depoAuthorsCaroline Rogers, Carlos E. Ramos-ScharrónTransforming Palmyra Atoll to native-tree dominance will increase net carbon storage and reduce dissolved organic carbon reef runoff
Native forests on tropical islands have been displaced by non-native species, leading to calls for their transformation. Simultaneously, there is increasing recognition that tropical forests can help sequester carbon that would otherwise enter the atmosphere. However, it is unclear if native forests sequester more or less carbon than human-altered landscapes. At Palmyra Atoll, efforts are underwayAuthorsKate Longley-Wood, Mary Engels, Kevin D. Lafferty, John P. McLaughlin, Alex WegmannViral-like particles are associated with endosymbiont pathology in Florida corals affected by stony coral tissue loss disease
Stony coral tissue loss disease (SCTLD) was first documented in 2014 near the Port of Miami, Florida, and has since spread north and south along Florida’s Coral Reef, killing large numbers of more than 20 species of coral and leading to the functional extinction of at least one species, Dendrogyra cylindrus. SCTLD is assumed to be caused by bacteria based on presence of different molecular assemblAuthorsThierry M. Work, Tina M. Weatherby, Jan H. Landsberg, Yasunaru Kiryu, Samantha M. Cook, Esther C. PetersSimilarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease
For several decades, white plagues (WPDs: WPD-I, II and III) and more recently, stony coral tissue loss disease (SCTLD) have significantly impacted Caribbean corals. These diseases are often difficult to separate in the field as they produce similar gross signs. Here we aimed to compare what we know about WPD and SCTLD in terms of: (1) pathology, (2) etiology, and (3) epizootiology. We reviewed ovAuthorsAldo Cróquer, Ernesto Weil, Caroline RogersSimilarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease
For several decades, white plagues (WPDs: WPD-I, II and III) and more recently, stony coral tissue loss disease (SCTLD) have significantly impacted Caribbean corals. These diseases are often difficult to separate in the field as they produce similar gross signs. Here we aimed to compare what we know about WPD and SCTLD in terms of: (1) pathology, (2) etiology, and (3) epizootiology. We reviewed ovAuthorsAldo Cróquer, Ernesto Weil, Caroline RogersDisease of coral and coral reef fishes
The Department of the Interior protects sensitive habitats amounting to about 3,600,000 acres of coral reefs and other submerged lands. These reefs are important ecosystems in 13 National Wildlife Refuges, 10 National Parks and in certain territorial waters such as the Wake Atoll.AuthorsFrank PanekA comparative baseline of coral disease in three regions along the Saudi Arabian coast of the central Red Sea
Coral disease is a growing problem for coral reefs globally and diseases have been linked to thermal stress, excess nutrients, overfishing and other human impacts. The Red Sea is a unique environment for corals with a strong environmental gradient characterized by temperature extremes and high salinities, but minimal terrestrial runoff or riverine input and their associated pollution. Yet, relativAuthorsGreta S. Aeby, Amanda Shore, Thor Jensen, Maren Ziegler, Thierry M. Work, Christian VoolstraGlobal tropical reef fish richness could decline by around half if corals are lost
Reef fishes are a treasured part of marine biodiversity, and also provide needed protein for many millions of people. Although most reef fishes might survive projected increases in ocean temperatures, corals are less tolerant. A few fish species strictly depend on corals for food and shelter, suggesting that coral extinctions could lead to some secondary fish extinctions. However, secondary extincAuthorsGiovanni Strona, Kevin D. Lafferty, Simone Fattorini, Pieter S.A. Beck, Francois Guilhaumon, Roberto Arrigoni, Simone Montano, Davide Seveso, Paolo Galli, Serge Planes, Valeriano ParraviciniIdentifying metabolic alterations associated with coral growth anomalies using 1H NMR metabolomics
Coral growth anomalies (GAs) are tumor-like protrusions that are detrimental to coral health, affecting both the coral skeleton and soft tissues. These lesions are increasingly found throughout the tropics and are commonly associated with high human population density, yet little is known about the molecular pathology of the disease. Here, we investigate the metabolic impacts of GAs through 1H nucAuthorsErik R. Andersson, Rusty D. Day, Thierry M. Work, Paul E. Anderson, Cheryl M. Woodley, Tracey B. SchockStony coral tissue loss disease in Florida is associated with disruption of host–zooxanthellae physiology
Samples from eight species of corals (Colpophyllia natans, Dendrogyra cylindrus, Diploria labyrinthiformis, Meandrina meandrites, Montastraea cavernosa, Orbicella faveolata, Pseudodiploria strigosa, and Siderastrea siderea) that exhibited gross clinical signs of acute, subacute, or chronic tissue loss attributed to stony coral tissue loss disease (SCTLD) were collected from the Florida Reef TractAuthorsJan Landsberg, Yasunari Kiryu, Esther Peters, Patrick Wilson, Yvonne Waters, Kerry Maxwell, Lindsay Huebner, Thierry M. Work - News