Large inland waterbodies are oceanic in many ways, facing many of the same issues as the ocean. The USGS conducts research and monitoring in the Great Lakes region and in other inland seas across the country to understand these large bodies of water and inform how we use and manage them.
Great Lakes Science Center

Great Lakes Science Center (GLSC) scientists work in the Great Lakes region and other parts of the country to meet the nation’s need for scientific information used by resource managers to restore, enhance, manage, and protect the living resources and habitats in the Great Lakes basin.
Salton Sea

Changes in regional water management practices have reduced freshwater inflow to the Salton Sea, changing what was once a popular vacation destination to a shrinking hypersaline lake. As the lake bed dries, managers will depend on careful monitoring and research to inform critical decisions affecting the future of the lake and surrounding communities.
The Great Lakes
The Great Lakes—Superior, Michigan, Huron, Erie, and Ontario—form the largest surface of freshwater in the world, comprising more than 94,250 square miles (244,106 square kilometers) of east-central North America. The lakes are critical components of the regional economies in both the United States and Canada. They are important sources of drinking water, transportation, and irrigation, and provide recreational opportunities such as boating, fishing, hunting, and bird watching, as well as vital habitat to a myriad of wildlife species like the bald eagle. They also face threats such as invasive species, harmful algal blooms, and pressures from human activities related to mining and other resource use and extraction.
Inland Seas
In addition to studying the Great Lakes, USGS scientists are conducting similar research in other inland seas, such as Great Salt Lake and the Salton Sea. This research helps to provide resource managers with the information they need to restore, enhance, manage, and protect living resources and habitats.
Changes in regional water management practices have reduced freshwater inflow to the Salton Sea in Southern California, changing what was once a popular vacation destination to a shrinking hypersaline lake. As the lakebed dries, resource managers will depend on careful monitoring and research to inform critical decisions affecting the future of the lake and surrounding communities. Learn more
The Great Salt Lake is located on a playa, consequently small changes in the elevation of the water surface result in large changes in the surface area of the lake. The USGS has been collecting water-surface-elevation data from Great Salt Lake since 1875 and continuously since October 1902. The north part of the lake has been monitored since April 1966. Learn more
Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan
Understanding sources and distribution of Escherichia coli at Lake St. Clair Metropark Beach, Macomb County, Michigan
Importance of nonindigenous harpacticoids (Crustacea: Copepoda) decrease with depth in Lake Ontario
Export of pelagic fish larvae from a large Great Lakes connecting channel
Genomics reveals identity, phenology and population demographics of larval ciscoes (Coregonus artedi, C. hoyi, and C. kiyi) in the Apostle Islands, Lake Superior
Setting and tracking suppression targets for sea lampreys in the Great Lakes
Consequences of changing water clarity on the fish and fisheries of the Laurentian Great Lakes
Fishing for food: Quantifying recreational fisheries harvest in Wisconsin lakes
Adapting to climate change: Guidance for the management of inland glacial lake fisheries
Large-scale modeled contemporary and future water temperature estimates for 10774 Midwestern U.S. Lakes
Developing fish trophic interaction indicators of climate change for the Great Lakes
Dynamic hypoxic zones in Lake Erie compress fish habitat, altering vulnerability to fishing gears
Lake Michigan Basin groundwater system
Great Lakes Geologic Mapping Project
Invasive Phragmites Science: Management Tools for the Control of Invasive Phragmites to Foster the Restoration of the Great Lakes
Harmful Algal Blooms in Pennsylvania
Climate, Storms, and the Drivers of Cyanobacteria Blooms in Lake Superior
Understanding and Forecasting Potential Recruitment of Lake Michigan Fishes
Impacts of Climate Change on Vegetation, Ecohydrology, and Management of Manoomin (Wild Rice) Watersheds
Aquatic Native Species and Habitat Restoration: Coregonine Restoration
Food Web Changes Dampen Expected Reductions in Lake Trout Mercury Levels in Lake Michigan—Invasive Species Play Major Role
Aquatic Native Species and Habitat Restoration: Quantifying Coregonine Habitat Use Dynamics
Invasive Mussel Control Science: Dreissenid Mussel Growth in Lake Ontario
Foundations for Future Restoration Actions: Lake Erie Central Basin Hypoxia Monitoring
Yuma Ridgway's Rail (Rallus obsoletus yumanensis) Population Surveys, Rail Movement, and Potential Habitat at the Salton Sea of California
Lake trout hatch rates using adults collected in 2019 from Northern Refuge, Lake Michigan
Lake Erie Fish Community Data, 2013-2021
Biological Tissue Data Used to Evaluate Selenium Hazards in the Salton Sea Ecosystem (1984-2020)
Sub-bottom chirp data acquired in the Salton Sea, California, between 2006 and 2008
Water and sediment data used to evaluate selenium hazards in the Salton Sea ecosystem
Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2020
Flood inundation map geospatial datasets for Lake Ontario, New York
Thiamine concentrations in lake trout eggs collected from the Great Lakes in 2019-20
Velocity surveys and three-dimensional point measurements of basic water-quality constituents in nearshore Lake Erie in the vicinity of Villa Angela Beach and Euclid Creek, Cleveland, Ohio, June 10–12, 2019, and August 19–21, 2019
Lake Ontario April Prey Fish Bottom Trawl Survey, 1997-2021
Soil physical, chemical, and biological data from edge-of-field agricultural water quality monitoring sites in Great Lakes States
National Climate Adaptation Science Center
12201 Sunrise Valley Drive
MS 516
Reston, VA 20192
United States
Ohio - Columbus Office
6460 Busch Blvd.
Ste 100
Columbus, OH 43229-1737
United States
Florence Bascom Geoscience Center
12201 Sunrise Valley Drive
Reston, VA 20192
United States
Pennsylvania Water Science Center
215 Limekiln Road
New Cumberland, PA 17070
United States
- Overview
The Great Lakes
The Great Lakes—Superior, Michigan, Huron, Erie, and Ontario—form the largest surface of freshwater in the world, comprising more than 94,250 square miles (244,106 square kilometers) of east-central North America. The lakes are critical components of the regional economies in both the United States and Canada. They are important sources of drinking water, transportation, and irrigation, and provide recreational opportunities such as boating, fishing, hunting, and bird watching, as well as vital habitat to a myriad of wildlife species like the bald eagle. They also face threats such as invasive species, harmful algal blooms, and pressures from human activities related to mining and other resource use and extraction.
Large inland waterbodies are oceanic in many ways, facing many of the same issues as the ocean. The USGS conducts research and monitoring in the Great Lakes region and in other inland seas across the country to understand these large bodies of water and inform how we use and manage them. Inland Seas
In addition to studying the Great Lakes, USGS scientists are conducting similar research in other inland seas, such as Great Salt Lake and the Salton Sea. This research helps to provide resource managers with the information they need to restore, enhance, manage, and protect living resources and habitats.
Salton Sea
Changes in regional water management practices have reduced freshwater inflow to the Salton Sea in Southern California, changing what was once a popular vacation destination to a shrinking hypersaline lake. As the lakebed dries, resource managers will depend on careful monitoring and research to inform critical decisions affecting the future of the lake and surrounding communities. Learn moreGreat Salt Lake
The Great Salt Lake is located on a playa, consequently small changes in the elevation of the water surface result in large changes in the surface area of the lake. The USGS has been collecting water-surface-elevation data from Great Salt Lake since 1875 and continuously since October 1902. The north part of the lake has been monitored since April 1966. Learn more - Publications
Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan
Attempts to mitigate shoreline microbial contamination require a thorough understanding of pollutant sources, which often requires multiple years of data collection (e.g., point/nonpoint) and the interacting factors that influence water quality. Because restoration efforts can alter shoreline or beach morphology, revisiting source inputs is often necessary. Microbial source tracking (MST) using soAuthorsMeredith B. Nevers, Paul M. Buszka, Muruleedhara Byappanahalli, Travis Cole, Steven R. Corsi, P. Ryan Jackson, Julie L. Kinzelman, Cindy H Nakatsu, Mantha S. PhanikumarUnderstanding sources and distribution of Escherichia coli at Lake St. Clair Metropark Beach, Macomb County, Michigan
Lake St. Clair Metropark Beach (LSCMB) in Michigan is a public beach near the mouth of the Clinton River that has a history of beach closures for public health concerns. The Clinton River is designated as a Great Lakes Area of Concern, and the park has a Beneficial Use Impairment for beach closings because of elevated Escherichia coli (E. coli) concentrations. The U.S. Geological Survey, in cooperAuthorsLisa R. Fogarty, Jessica A. Maurer, Ian M. Hyslop, Alexander R. Totten, Christopher M. Kephart, Angela K. BrennanImportance of nonindigenous harpacticoids (Crustacea: Copepoda) decrease with depth in Lake Ontario
Harpacticoid copepods can be a substantial component of the meiobenthic community in lakes and serve an ecological role as detritivores. Here we present the first species-level lake-wide quantitative assessment of the harpacticoid assemblage of Lake Ontario with emphasis on the status of nonindigenous species. Additionally, we provide COI-5P sequences of harpacticoid taxa through Barcode of Life DAuthorsJoe K. Connolly, Brian O'Malley, Patrick Hudson, James M. Watkins, Lyubov E. Burlakova, Lars G. RudstamExport of pelagic fish larvae from a large Great Lakes connecting channel
The St. Clair-Detroit River System is located in the heart of the North American Laurentian Great Lakes, connecting lakes Huron and Erie, contributing over 90% of the inflow to Lake Erie, and providing spawning habitat for many fishes including walleye (Sander vitreus), yellow perch (Perca flavescens), and lake whitefish (Coregonus clupeaformis). Dredging and channelization have greatly altered thAuthorsEdward F. Roseman, Mark DuFour, Jeremy Pritt, J. Fischer, Robin DeBruyne, David BennionGenomics reveals identity, phenology and population demographics of larval ciscoes (Coregonus artedi, C. hoyi, and C. kiyi) in the Apostle Islands, Lake Superior
We demonstrate, for the first time, the ability to reliably assign an assemblage of larval coregonines [Salmonidae Coregoninae] to shallow and multiple deepwater species. Larval coregonines from the Apostle Islands, Lake Superior, were genotyped using restriction site-associated DNA sequencing (RADseq) and were assigned to species using reference genotypes from adult corgonines from the same regioAuthorsHannah Lachance, Amanda Susanne Ackiss, Wesley Larson, Mark Vinson, Jason D. StockwellSetting and tracking suppression targets for sea lampreys in the Great Lakes
In response to invasive species, the course of action taken by management agencies often evolves over a range of options from a do-nothing approach to suppression to complete eradication. As a case study of suppression targets, we explore the history of approaches used by the Great Lakes Fishery Commission in response to the invasion of the Laurentian Great Lakes by sea lampreys (Petromyzon marinuAuthorsTed Treska, Mark P. Ebener, Gavin Christie, Jean V. Adams, Michael J SiefkesConsequences of changing water clarity on the fish and fisheries of the Laurentian Great Lakes
Human-driven environmental change underlies recent changes in water clarity in many of the world’s great lakes, yet our understanding of the consequences of these changes on the fish and fisheries they support remains incomplete. Herein, we offer a framework to organize current knowledge, guide future research, and help fisheries managers understand how water clarity can affect their valued populaAuthorsDavid Bunnell, Stuart A. Ludsin, Roger L. Knight, Lars G. Rudstam, Craig E. Williamson, Tomas O. Hook, Paris D. Collingsworth, Barry M. Lesht, Richard P. Barbiero, Anne E. Scofield, Edward S. Rutherford, Layne Gaynor, Henry A. Vanderploeg, Marten A. KoopsFishing for food: Quantifying recreational fisheries harvest in Wisconsin lakes
Recreational fisheries have high economic worth, valued at US$190 billion globally. An important, but underappreciated, secondary value of recreational catch is its role as a source of food. This contribution is poorly understood due to difficulty in estimating recreational harvest at spatial scales beyond a single system, as traditionally estimated from individual creel surveys. Here, we addressAuthorsHolly Embke, T. Douglas Beard, Abigail Lynch, Vander ZandenAdapting to climate change: Guidance for the management of inland glacial lake fisheries
Climate change is altering glacial lake fisheries in the United States, presenting a complex challenge for fisheries managers. Here we provide a regional perspective to guide management of heterogeneous and yet interdependent fishery resources in glacial lakes of the upper Midwest. Our main objective was to promote the adaptation of inland glacial lakes fisheries management to climate change by ouAuthorsR.W. Tingley III, Craig Paukert, G. G. Sass, P. C. Jacobson, G. J. A. Hansen, Abigail Lynch, P. D. ShannonLarge-scale modeled contemporary and future water temperature estimates for 10774 Midwestern U.S. Lakes
Climate change has already influenced lake temperatures globally, but understanding future change is challenging. The response of lakes to changing climate drivers is complex due to the nature of lake-atmosphere coupling, ice cover, and stratification. To better understand the diversity of lake responses to climate change and give managers insight on individual lakes, we modelled daily water tempeAuthorsLuke A. Winslow, Gretchen J. A. Hansen, Jordan S. Read, Michael NotaroDeveloping fish trophic interaction indicators of climate change for the Great Lakes
This project addressed regional climate change effects on aquatic food webs in the Great Lakes. We sought insights by examining Lake Erie as a representative system with a high level of anthropogenic impacts, strong nutrient gradients, seasonal hypoxia, and spatial overlap of cold- and cool-water fish guilds. In Lake Erie and in large embayments throughout the Great Lakes basin, this situation isAuthorsRichard T. Kraus, Carey T. Knight, Ann Marie Gorman, Patrick M. Kocovsky, Brian C. Weidel, Mark W. RogersDynamic hypoxic zones in Lake Erie compress fish habitat, altering vulnerability to fishing gears
Seasonal degradation of aquatic habitats from hypoxia occurs in numerous freshwater and coastal marine systems and can result in direct mortality or displacement of fish. Yet, fishery landings from these systems are frequently unresponsive to changes in the severity and extent of hypoxia, and population-scale effects have been difficult to measure except in extreme hypoxic conditions with hypoxia-AuthorsRichard T. Kraus, Carey T. Knight, Troy M. Farmer, Ann Marie Gorman, Paris D. Collingsworth, Glenn J. Warren, Patrick M. Kocovsky, Joseph D. Conroy - Science
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Lake Michigan Basin groundwater system
The study area for the Lake Michigan Basin groundwater-flow model encompasses the entire Michigan Structural Basin centered in the Lower Peninsula of Michigan and extending into parts of Illinois, Wisconsin, Indiana, Ohio, and Ontario, Canada.Great Lakes Geologic Mapping Project
Great Lakes Geologic Mapping ProjectInvasive Phragmites Science: Management Tools for the Control of Invasive Phragmites to Foster the Restoration of the Great Lakes
The USGS is developing innovative Phragmites control measures to keep this rapidly spreading invasive plant from further expanding its range into new wetland habitats and to aid in the development of successful restoration strategies. Scientists are conducting studies and field tests to determine (1) if microbes (i.e., fungi and bacteria) that live within and around Phragmites are enabling the...Harmful Algal Blooms in Pennsylvania
The U.S. Geological Survey is collaborating with State and local partners to develop models that provide real-time estimates of Escherichia coli (E. coli) (for pathogens) and (or) microcystin (for freshwater cyanotoxins) levels at Great Lakes beaches and drinking-water intakes.Climate, Storms, and the Drivers of Cyanobacteria Blooms in Lake Superior
Cyanobacteria blooms are one of the most significant management challenges in the Great Lakes today. Recurring blooms of varying toxicity are commonly observed in four of the Great Lakes, and the fifth, Lake Superior, has experienced intermittent nearshore blooms since 2012. The recent advent of cyanobacterial blooms in Lake Superior is disconcerting, given the highly valued, pristine water qualitUnderstanding and Forecasting Potential Recruitment of Lake Michigan Fishes
Yellow perch and alewife are ecologically, economically, and culturally important fish species in Lake Michigan whose populations support recreational and commercial fisheries. However, both of these species’ populations have been in decline for over 20 years. This project seeks to understand the factors affecting variability in offspring survival of yellow perch and alewife in Lake Michigan in oImpacts of Climate Change on Vegetation, Ecohydrology, and Management of Manoomin (Wild Rice) Watersheds
Manoomin, or wild rice, is an essential, sacred species for Native people throughout the Upper Great Lakes region, who have relied on the plant for food and ceremony for hundreds of years. Manoomin is also important to non-Native people, who also harvest it and benefit from the wildlife sustained by it. Manoomin is an indicator of ecosystem health—if manoomin is healthy so is the surrounding ecosy...Aquatic Native Species and Habitat Restoration: Coregonine Restoration
Human activities have greatly impacted fish populations in the Great Lakes, including various Coregonus species such as deepwater cisco (e.g. bloater (Coregonus hoyi) and lake herring (Coregonus. artedi). The USGS, U.S. Fish and Wildlife Service (USFWS), National Park Service (NPS), Bureau of Indian Affairs (BIA), Department of State (DOS) and Great Lakes Fishery Commision (GLFC) are leading a...Food Web Changes Dampen Expected Reductions in Lake Trout Mercury Levels in Lake Michigan—Invasive Species Play Major Role
Combined analyses of mercury, nitrogen, and carbon isotopes in archived lake trout (Salvelinus namaycush) tissues and sediment cores in Lake Michigan from 1978 to 2012 indicated that lake trout mercury concentrations mirrored declines in mercury sources prior to the arrival of invasive species that changed mercury transfer through the food and dampened the expected decreases in mercury...Aquatic Native Species and Habitat Restoration: Quantifying Coregonine Habitat Use Dynamics
Restoring and maintaining extent of native coregonid populations in the Great Lakes is a basin-wide priority. In response, an adaptive framework has identified knowledge gaps associated with spatial dynamics and stock diversity. This project used the Cooperative Science and Monitoring Initiative (CSMI) with an incredible in-kind support from agencies and universities from across the region to...Invasive Mussel Control Science: Dreissenid Mussel Growth in Lake Ontario
USGS scientists worked with the National Oceanic and Atmospheric Administration (NOAA) to monitor growth of invasive zebra mussels (Dreissena polymorpha) in Lake Ontario with the goal of improving understanding on the effects these mussels have on the Lake food web.Foundations for Future Restoration Actions: Lake Erie Central Basin Hypoxia Monitoring
The recently reauthorized Great Lakes Water Quality Agreement calls for a reduction in severity and spatial extent of hypoxia (low oxygen zones) with emphasis on Lake Erie’s Central Basin. - Data and More
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Yuma Ridgway's Rail (Rallus obsoletus yumanensis) Population Surveys, Rail Movement, and Potential Habitat at the Salton Sea of California
Data were obtained as part of a project assessing risk to the federal and California listed endangered Yuma Ridgway's rail (Rallus obsoletus yumanensis) populations resulting from selenium contaminated agricultural runoff and to inform habitat restoration and management decisions. Four data sets were produced and used to analyze patterns of Yuma Ridgway's rail (Rallus obsoletus yumanensis, renamedLake trout hatch rates using adults collected in 2019 from Northern Refuge, Lake Michigan
Data includes hatch, unfertilized, underdeveloped, and larval mortality count data of lake trout (Salvelinus namaycush) eggs fertilized from adult gametes collected within Northern Refuge reefs in Lake Michigan conducted by the U.S. Geological Survey Great Lakes Science Center during Fall 2019 gill net survey. Adult lake trout were collected using gill net (4.5, 5.5, and 6.0 inch) panels. GametesLake Erie Fish Community Data, 2013-2021
Assessing the distribution and abundance of both predator and prey (forage) fish species is a cornerstone of ecosystem-based fishery management, and supports decision making that considers food-web interactions. In support of binational Great Lakes fishery management the objectives of this survey were to: provide estimates of densities of key forage and predator species in the western basin of LakBiological Tissue Data Used to Evaluate Selenium Hazards in the Salton Sea Ecosystem (1984-2020)
In response to the rapidly evolving conditions at the Salton Sea with the emergence of both newly formed wetland habitat and increasing hazards to wildlife, the U.S. Bureau of Reclamation and U.S. Geological Survey have funded a re-evaluation of data gaps regarding selenium concentrations in biota the region. As part of this work, selenium concentrations in biological tissue samples were compiledSub-bottom chirp data acquired in the Salton Sea, California, between 2006 and 2008
More than 1,000 line-km of sub-bottom chirp data were collected with an Edgetech 0.5-16 kHz subscan system by Scripps Institution of Oceanography between 2006 and 2008 in the Salton Sea, California, with assistance from the U.S. Geological Survey (USGS). Data were subsequently donated by Scripps to the USGS for public release (USGS field activity identifier 2006-603-DD).Water and sediment data used to evaluate selenium hazards in the Salton Sea ecosystem
Due to declining water levels and increasing salinity in the Salton Sea which may increase the hazards to wildlife, the U.S. Geological Survey and U.S. Bureau of Reclamation are re-evaluating selenium concentrations in the region. As part of this work, selenium concentrations in water and sediment samples and selected other inorganic constituents were compiled from published reports, public databaBottom dissolved oxygen measurements from Lake Erie's Central Basin, 2020
This data set, compiled by USGS Lake Erie Biological Station, provides near-bottom measurements of temperature and dissolved oxygen for the Central Basin of Lake Erie. Data were recorded by self-contained environmental data loggers (PME, Inc., MiniDOT data loggers). The data loggers were deployed during the stratified period (i.e., beginning of June 2020 through late October 2020) to better undersFlood inundation map geospatial datasets for Lake Ontario, New York
Static flood inundation boundary extents were created along the entire shoreline of Lake Ontario in Cayuga, Jefferson, Monroe, Niagara, Orleans, Oswego, and Wayne Counties in New York by using recently acquired (2007, 2010, 2014, and 2017) light detection and ranging (lidar) data. The flood inundation maps, accessible through the USGS Flood Inundation Mapping Program website at https://www.usgs.goThiamine concentrations in lake trout eggs collected from the Great Lakes in 2019-20
Text files containing data regarding attributes of lake trout egg thiamine concentrations from sites in lakes Huron and Michigan collected during 2019-20, sampling site locations and quality assurance quality control values for comparison to previous years (2017-18) lake trout egg thiamine concentrations.Velocity surveys and three-dimensional point measurements of basic water-quality constituents in nearshore Lake Erie in the vicinity of Villa Angela Beach and Euclid Creek, Cleveland, Ohio, June 10–12, 2019, and August 19–21, 2019
Water velocities and water-quality constituents were measured along planned survey lines, which were generally perpendicular to the shoreline and spaced 100 meters apart, over an approximately 2.3-mile section of nearshore Lake Erie on June 10-12, 2019 (survey 1), and August 19-21, 2019 (survey 2), using a 1200 kHz acoustic Doppler current profiler (ADCP), a YSI 6920 V2 multiparameter sonde, and aLake Ontario April Prey Fish Bottom Trawl Survey, 1997-2021
This data release includes Lake Ontario prey fish data including species captured, relative abundance, spatial distribution, size structure, and age data from the April or spring prey fish bottom trawl survey, 1997 and 2021. Data from 1997 - 2015 are from U.S. waters of Lake Ontario while data from 2016 - 2021 include both U.S. and Canadian waters of Lake Ontario. Details about the vessel and gearSoil physical, chemical, and biological data from edge-of-field agricultural water quality monitoring sites in Great Lakes States
Soil data were collected from catchments of USGS edge-of-field (EOF) monitoring sites in Great Lakes Restoration Initiative (GLRI) priority watersheds. As part of this release, soil data from 2016 through 2019 are provided from 14 sites spanning 5 Great Lake States (Wisconsin, Michigan, Ohio, Indiana, and New York). The data collected are from private farms representing a variety of agronomic syst - Multimedia
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National Climate Adaptation Science Center
12201 Sunrise Valley Drive
MS 516
Reston, VA 20192
United StatesEmailOhio - Columbus Office
6460 Busch Blvd.
Ste 100
Columbus, OH 43229-1737
United StatesFlorence Bascom Geoscience Center
12201 Sunrise Valley Drive
Reston, VA 20192
United StatesPennsylvania Water Science Center
215 Limekiln Road
New Cumberland, PA 17070
United States